Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq56 426 1e-114 seq181 111 1e-19 seq47 91.5 1e-13 >seq56 Length=135535 Score = 426 bits (472), Expect = 1e-114 Identities = 1215/1853 (66%), Gaps = 48/1853 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 117521 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 117580 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 117581 GTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATA 117640 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || || ||||||||||| | || | ||| |||| || || ||||| || || Sbjct 117641 AAGGCACCGCGGTCGGCGGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACAGT 117699 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 |||||| || | |||| || || | ||| | || |||| | ||| ||||| Sbjct 117700 CTTGTAGAGAGCCTTGATGTCGGCGGGGAC--ATTGGGGATGTTCTGAATGGAACCGTTC 117757 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| || || | ||| ||| Sbjct 117758 TCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTG 117817 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 117818 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 117877 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | ||| || ||||| ||| Sbjct 117878 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGC 117937 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | ||| || || Sbjct 117938 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA---TCTGCTCCTTCAGA 117994 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | ||| ||||||| || || ||| | ||||| |||||| ||| |||| | || Sbjct 117995 TTGTCCCACTCCCACAACTCAGAAGGCTTGACATT---CCACATGTCGAATTGAAGAACA 118051 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC- 22737 || | || || ||| | | | || ||| || || | ||| || || Sbjct 118052 CCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA 118111 Query 22738 ---GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 | |||| | | || ||| || || ||||||||||||| |||||| | || Sbjct 118112 AGAGAAGCTGTC----AGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTC 118167 Query 22795 ---GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC 22851 ||| ||| || || || | ||||| |||| | || ||||| || | ||| Sbjct 118168 ACGGGCCTCGG-GAGACT--CGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACC 118224 Query 22852 CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCA 22907 |||||| || | |||||| ||||| | | || || || |||| ||| | Sbjct 118225 CTGAACACCAACACCGATGGGTCGATGTCGCATGTTG----CTGTTGCGAGCCTCCTCAA 118280 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 || || ||| |||||| | |||| | ||| | | || | || || | Sbjct 118281 TGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCT 118340 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT-GTA--CAACAAACTTGTTGACGGCGA 23024 | |||||||| ||| || ||| | || || | ||| | Sbjct 118341 CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAA 118400 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 ||||| | ||||| || || ||||| || || |||||| | || || || | Sbjct 118401 GAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGC 118460 Query 23085 ATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | ||||| ||| | || || |||| ||| |||||||||| || | ||||| | Sbjct 118461 ACAGATTAGAGCTGCGA---ATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGG 118517 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 ||||||||| ||||| | || ||||||||||| ||| ||||||| || | || Sbjct 118518 CATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACC 118577 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | | |||| || ||| | ||| || | | ||| || ||| ||||| | ||| Sbjct 118578 AGAGCTTCTGGGCACGAATA-GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAG 118636 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | || ||||| || | || || || || |||||||| || | | | ||||||||| Sbjct 118637 AGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATG 118696 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 || |||| || ||||| ||||| |||| |||||||| || ||||| ||||| Sbjct 118697 AGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCA 118756 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||| || ||||| || || || || |||||| ||||||| |||||| | |||| Sbjct 118757 AGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAG 118816 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || |||||||| || ||||| ||||||||||| | |||||| || || |||| ||||||| Sbjct 118817 TCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTG 118876 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 |||||||| || ||||| | ||| ||||||||| | || | ||||| || | || ||| Sbjct 118877 CCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCG 118936 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| | ||| ||| || | || || | || || | | ||| |||| Sbjct 118937 TTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTC 118996 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 || || || || || || || || ||||| || || || |||||||||||||| Sbjct 118997 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATA 119056 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || || |||||||| || || | |||| | |||||| ||||||| || || ||| Sbjct 119057 CCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGG 119116 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||| | || ||| ||||| || |||||| || ||| | ||||| || | | Sbjct 119117 GTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGG 119176 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | || ||||||| ||||| ||||||| || |||||||| ||| Sbjct 119177 TAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATC 119236 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 |||| ||||||| |||||| | |||||| | ||||| |||||||| | | || Sbjct 119237 ATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGA 119296 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | |||||| ||||| | |||| || ||||| || Sbjct 119297 GTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGA 119349 >seq181 Length=64741 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 || ||| ||| ||||||||| ||||| ||||| || || ||||| || || || |||| Sbjct 8351 ATCGAAGCAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAG 8292 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || |||| || | | | || | ||||| || || ||||||||| || | Sbjct 8291 GTCGAGTCGTCTGATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATT 8232 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || ||||||||||||||||| |||||||| || ||| | || ||| ||| | Sbjct 8231 CCCCCTGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTT 8172 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || || || || ||||| || || || Sbjct 8171 TCTGATTACAACATTCAGAAGGAGTCAACACTTCACCTCGTTCT 8128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || || ||| | || || ||| | || Sbjct 7582 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 7523 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||| ||||| ||| | || || |||||| Sbjct 7522 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 7463 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| |||||||| || ||||||| || ||| Sbjct 7462 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 7403 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 7402 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 7355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || || || | || |||||| | || Sbjct 7810 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 7751 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || || ||||||||| | || || |||||| Sbjct 7750 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 7691 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || || | || || ||| || ||| || || Sbjct 7690 CAGCGACTCATCTTTGCTGGTAAGCAACTCGAGGATGGCCGAACTTTGTCCGACTACAAT 7631 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| |||| || | ||| |||| |||| Sbjct 7630 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGGTA 7582 >seq47 Length=141222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||||||||| ||||| || |||||| | || || || | || |||| | Sbjct 51752 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 51693 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | ||| |||||||| ||| | || || ||||||||||| | Sbjct 51692 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 51633 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || ||| || |||||||| || Sbjct 51632 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 51573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761290402640