Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq56 87.8 4e-12 >seq56 Length=135535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 416/653 (64%), Gaps = 16/653 (2%) Strand=Plus/Plus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| |||||||| | |||| |||||| ||||||| | || | || Sbjct 118612 GCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAG 118671 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 118672 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 118729 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||| ||||| | | ||| | ||| |||| || || | | | ||||| || Sbjct 118730 ATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTG 118789 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAG 94635 ||| ||||||| | |||| |||||| |||||| |||||| | ||| Sbjct 118790 CCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAG 118849 Query 94636 ATGGC---TGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACG 94692 ||||| |||| | || | | ||| || |||||| ||| | | ||| | | Sbjct 118850 ATGGCAAATGCACCAGGTCGCTTATTG---CCGCCCTGGTCAACGTACCTGGCAGTGTTG 118906 Query 94693 TTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGAC-GAAATG 94749 || |||| | || | | |||| || | ||| ||||| | || | | |||| Sbjct 118907 TTGAAGACGCGAAGCATGGGAATGATGCC--GTTGGATGTACC-GTTGGTGCCGGCAATG 118963 Query 94750 GGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAG 94809 || | || | | || | || | ||||| || ||||| |||||||| Sbjct 118964 TAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAG 119023 Query 94810 ATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCC 94869 || || || ||| ||||| || || ||||| |||||||| || || | | | | Sbjct 119024 ATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCG 119083 Query 94870 AGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAA 94929 | ||||| || || || || || | | || ||| || || ||||| || || Sbjct 119084 ACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAG 119143 Query 94930 GCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCT 94989 || ||||| || | || |||||||| | || || || | || || |||| Sbjct 119144 GCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTG 119203 Query 94990 GATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||| ||| ||||| || || ||||||||||||| |||||| ||||| || Sbjct 119204 TCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGAC 119256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572373315735