Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq56 143 4e-29 >seq56 Length=135535 Score = 143 bits (158), Expect = 4e-29 Identities = 1086/1730 (63%), Gaps = 48/1730 (3%) Strand=Plus/Plus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 117827 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 117886 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| |||||| | || || || || ||||| || || Sbjct 117887 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCG 117946 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAAT 79228 | || || || | || ||||| | || |||| | || || ||| ||||| | Sbjct 117947 AGCAGCAACGAGTTGCGAATACCGT--GCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 118004 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGT 79288 |||| | ||||| || |||||||| | || |||| |||| ||| | | ||| Sbjct 118005 CCCACAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGG 118064 Query 79289 ATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA 79348 || || || | || || || |||| || || ||| | ||| | || | Sbjct 118065 GAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTCA 118124 Query 79349 ATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTAT 79408 || ||| |||||||| ||||| || | ||| ||||| || | || || | | Sbjct 118125 GGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACT 118184 Query 79409 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 79468 | || || | | || ||| ||||| || | || |||||||||| |||||| | Sbjct 118185 CGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGG 118244 Query 79469 GTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATA 79527 ||| ||||| | | || | || | ||| || ||| || |||| ||| | ||| || Sbjct 118245 GTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATG 118303 Query 79528 ATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT 79587 || || ||||| || | ||| | |||| ||| || | || || | || || | Sbjct 118304 ATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAG 118363 Query 79588 CGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACAAACGG 79639 || || ||| | || || || | || || | ||| |||| || ||||| | Sbjct 118364 CGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAACAG 118421 Query 79640 CTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGG 79699 | ||||||| || | || | || || || ||||| || ||| | ||||| Sbjct 118422 CAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGG 118481 Query 79700 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAG 79759 |||| | ||| | || || ||||| |||| || |||||||| || || || || || Sbjct 118482 TTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGT 118541 Query 79760 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 79819 | || || || |||| || || | || | | ||||| | || | | | |||| Sbjct 118542 TGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGA-GCTTCTGGGCACGA--ATAG 118598 Query 79820 ACTTGTATCTCTTT---TCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCC 79874 |||| | || | || || || | ||| | | | || ||||| || || Sbjct 118599 TCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCC 118656 Query 79875 CCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATC 79934 | ||| | | ||||| || |||| |||||||| | | ||| || || | || Sbjct 118657 ATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT--TC 118714 Query 79935 CTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 79992 ||| || || ||||| || ||||| || ||||| ||||| | || || || | | Sbjct 118715 TTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 118774 Query 79993 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 80052 | | || || || || |||||| | ||| || || | | | || | ||| Sbjct 118775 CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGC 118834 Query 80053 CACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTAT 80112 || || || | ||| ||||| | | || ||||| || || || ||||| || | ||| Sbjct 118835 CAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTAC 118894 Query 80113 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 || || ||||| || | || | | ||| ||||| || || ||||||||||| ||||| Sbjct 118895 CTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTG 118954 Query 80173 CCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTG 80230 |||| || || || | ||||| || | || | || || || || || | Sbjct 118955 CCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAG 119012 Query 80231 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCAT 80290 |||| || ||||| | || || || | || || ||||| || || ||||| || | Sbjct 119013 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGT 119072 Query 80291 CAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAA 80347 | |||||| | ||| |||||| ||||| | |||| | || || || || | Sbjct 119073 CCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGA 119129 Query 80348 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407 | | ||||| || ||||| || || || |||| || | ||| ||||| | | Sbjct 119130 AGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAA 119189 Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 | ||| || | | ||| || ||||| || ||||| | |||||||||||||| Sbjct 119190 CGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTC 119249 Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527 || ||||||||| || | ||| | | || ||| | |||| ||| || || |||| Sbjct 119250 GCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAA 119309 Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 80587 | || | || ||||||| ||||| | || | |||| || | ||||| | || Sbjct 119310 AGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTT 119369 Query 80588 TGTTAAC-TACATCCATG-GTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGG 80645 | | || || ||| || | | || || || || || | |||| || || Sbjct 119370 TCATGACGCACTCGTATGTCTGTT--TCGAGATCATTGGCGAGGCACGCTCATTCTTGGG 119427 Query 80646 ATTAACATAGTTGAATAAATC-CT-CCATCACTTCACTAAATAGtttttttGTTTCCTTG 80703 || ||||||| | ||| ||| || || || || | | ||||| || | |||| Sbjct 119428 GTTGACATAGTGGTATAGATCGCTGACAACAGCCGAC--CACTGCTTTTTAGTCTGCTTG 119485 Query 80704 TGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || | || || ||||| || | ||| || | ||| |||||||| ||||| Sbjct 119486 TGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 119535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260566843880