Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 >seq1 Length=456006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/261 (69%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14015 |||||||||| || || || || ||||| || ||||| || || | ||| || | | Sbjct 315063 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 315004 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || ||||| | || | || |||||||||||| ||||| || ||| ||| Sbjct 315003 CC--TGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGC 314946 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTT 14132 ||||| |||||||| |||| | |||||||||| ||| || | | | | | || || Sbjct 314945 AGCAAAGAATGCCAAAATGTGTGAGATAAAGTATTTCTCGTCGTCGCTCAGACGGTTGTT 314886 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||||||| || ||||| || ||||| | || || | ||||| ||| || | || Sbjct 314885 CCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGC 314826 Query 14193 TTTTTTATACATTACCCATAT 14213 || ||||||||| ||| || Sbjct 314825 CTTCTTATACATTTGCCAAAT 314805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583314175880