Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq56 156 6e-33 seq1 156 6e-33 seq471 89.7 8e-13 >seq56 Length=135535 Score = 156 bits (172), Expect = 6e-33 Identities = 313/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 |||||| |||||||||||||| || || || || | ||| ||||| | || |||||| Sbjct 118893 TACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGG 118834 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| ||||||||| | || |||| || ||| ||| ||||| || Sbjct 118833 CACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGT 118774 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AACG 97044 || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || | Sbjct 118773 GCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAG 118714 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | | || | |||| ||| ||||| ||| || || || || ||| | ||||||| | Sbjct 118713 AACGGGGAT--TGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATG 118656 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163 |||| ||||||||||| ||| | || |||| |||||||| || |||| | Sbjct 118655 GCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGACTA 118596 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| ||| | |||| || ||| | |||| | | | ||| ||||| || | || Sbjct 118595 TTCG-TGC-CCAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCGAGACGGGCAACCC 118538 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | || || ||||||||| || || | || |||||||| | |||| ||||| Sbjct 118537 CTTTATGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAATCTGGGAACCAT 118478 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| |||||||||||||| || | |||||| Sbjct 118477 TCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 118441 >seq1 Length=456006 Score = 156 bits (172), Expect = 6e-33 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| ||||||| || ||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 314805 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 314864 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | ||| ||| || ||| | | ||||| || Sbjct 314865 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTTATCTCA 314924 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || || |||| || Sbjct 314925 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGA-GCG 314983 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 314984 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 315042 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| |||||| ||||| || | ||||| Sbjct 315043 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATCGATAGCTACAT 315091 Score = 118 bits (130), Expect = 2e-21 Identities = 334/504 (66%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 315202 ATCCGGAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 315258 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| |||||| Sbjct 315259 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCG 315318 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | |||||| || Sbjct 315319 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTT 315378 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| || |||| ||| ||||| | ||| | Sbjct 315379 ATCTCCCGTGATGAGGGTTTGCACACAGATTTTG-CAT--GTCTGTTGC---ACT---CG 315429 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | || || | || ||||| | ||| || | ||| | ||||| || || | Sbjct 315430 CATCTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATTATCACCGACGCTGTTGGC 315489 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAA 125716 || || ||||||||| | ||||| | || || || || | | ||||||||| || Sbjct 315490 ATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCAC 315548 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG- 125773 |||||| | || || || ||||| || ||||||||| || |||| |||| Sbjct 315549 ACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTG-----GTTGCACTTGGT 315603 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 315604 AACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 315663 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 || ||||| ||||| ||||||||| Sbjct 315664 GGCAAGACAAACTTCTTCGAGAAG 315687 >seq471 Length=8418 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 7388 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 7329 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | ||| |||| || | | |||||||||||| ||||| | | ||| Sbjct 7328 GGTGTACCGATACGGATACCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 7269 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 7268 TTGTTGCAAGCAAT 7255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050705608920