Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 >seq1 Length=456006 Score = 102 bits (112), Expect = 7e-17 Identities = 174/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || |||||||| |||||| || ||||| ||||| || || | |||||| | | Sbjct 315063 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 315004 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||| ||| | || | || |||||||| || || || |||||| ||||| Sbjct 315003 CCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGCAG 314944 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625 |||| || || | ||||| ||||| | ||| |||| || || || || || Sbjct 314943 CAAAGAATGCCAAAATGTGTGAGATAAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 314884 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | || || || || | ||| | ||| || | ||||| ||||| || | |||| Sbjct 314883 AATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCT 314824 Query 13686 TCTTATACAT 13695 |||||||||| Sbjct 314823 TCTTATACAT 314814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977583367634