Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq181 143 6e-29 >seq181 Length=64741 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| ||||| || | ||||| || || || ||||| || ||| Sbjct 7614 GTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGTTGCTTACCA 7673 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || ||||| ||||| |||||||| | ||| Sbjct 7674 GCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTT 7733 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||||| | ||| ||| || || | |||||||||||| ||||| | || Sbjct 7734 ACATTATCGATCGTATC-CGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGT 7792 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 7793 CTTGACGAAGATCTGCAT 7810 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| || || ||| ||||| || || ||||| || || | ||||| Sbjct 7370 AAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 7429 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| |||||||| || | || || |||||||| || || || ||||| Sbjct 7430 TTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATC 7489 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | ||| ||||| || | |||||| || ||| || || | |||||||| Sbjct 7490 CTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGT 7549 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| || ||||| Sbjct 7550 CTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | ||| || || |||||||| || || ||| Sbjct 8110 ATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCA 8169 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || |||||||| || ||||| | ||| || ||||| Sbjct 8170 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGG 8229 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| | || ||||| || | ||||| | || Sbjct 8230 GGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCG 8289 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || || || || ||||| Sbjct 8290 ACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 Score = 118 bits (130), Expect = 2e-21 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| ||||| || || || | || ||||| || || || ||| Sbjct 7842 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 7901 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||||||||| || || || |||||||||||||| | || Sbjct 7902 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 7961 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || || || ||||| || || | || Sbjct 7962 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 8021 Query 104543 TTTACAAATATCTGCAT 104559 || |||| ||| ||||| Sbjct 8022 TTGACAACTAT-TGCAT 8037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384872148236