Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq59 107 2e-18 >seq59 Length=135092 Score = 107 bits (118), Expect = 2e-18 Identities = 176/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||| |||||| || ||||| |||| | | || ||||| | ||||| || Sbjct 31451 CCCGTGCTCCCGAACCCACCTGCTCCTCGCACACTCTCCTCCAGCTCCTGTACCTCCACC 31510 Query 5564 ACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || ||||| | || |||||| ||||| ||||| | || ||||||| ||| | Sbjct 31511 ACCTCGGGCGT-GTAGATGCGCTCAATGATCAATTGCGCCACTCTGTCGCCCTCCTTGAT 31569 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 ||| || ||| | | | | |||||| |||| || || | ||||||||||||||| Sbjct 31570 CTCAAAGTCGGTCTCGGCATGGTTGAAAAGCAGGACCTTGACTTGGCCGCGGTAGTCGGC 31629 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||| || || |||||||| |||||||| || ||| || || || ||||||||||| Sbjct 31630 GTCAATGACTCCCGCGCCAGTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGC 31689 Query 5743 CACGCGGCCGT 5753 | |||||||| Sbjct 31690 AATGCGGCCGT 31700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430049593738904