Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq181 105 6e-18 seq92 86.0 5e-12 >seq181 Length=64741 Score = 105 bits (116), Expect = 6e-18 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 |||||||| |||||| |||||||||||||||| | | || || ||||||| ||||| Sbjct 8137 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG-CGGCCGTCCTCGAGCTG 8195 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | |||| ||||||||| || || | | ||||||||| ||| || Sbjct 8196 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTT 8255 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || ||||| | ||||| ||||| || ||||| || ||||| Sbjct 8256 CGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 8315 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTT-GATC 48738 ||| || || || || || ||||| || ||| |||| Sbjct 8316 GAGGGTCTTGACGAAGATTTGCATGGTTGCTTCGATC 8352 >seq92 Length=104316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || ||||||||||| || |||||||| || || Sbjct 34739 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 34797 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | || || ||||||||||| | | || | || ||||| ||| | Sbjct 34798 TCAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 34857 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | ||||| |||| ||||||| Sbjct 34858 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCA 34917 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 ||| | || || || || || ||||| ||||| || |||||||||||| || || Sbjct 34918 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 34973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246492122917