Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq388 174 2e-39 seq14 172 9e-39 >seq388 Length=20201 Score = 174 bits (192), Expect = 2e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || || |||||||| ||||| Sbjct 12495 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCTAT 12553 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 12554 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 12613 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | |||| ||||||| || || |||| |||||| || ||| || || Sbjct 12614 TCGCACTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 12673 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || ||||||| || |||| || || || Sbjct 12674 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACGCTCTGAAGCGACAGGG 12733 Query 16672 CCG 16674 ||| Sbjct 12734 CCG 12736 >seq14 Length=214366 Score = 172 bits (190), Expect = 9e-39 Identities = 199/263 (76%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 62966 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 62908 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| |||||||| ||||||||| |||||| || | || ||||||| Sbjct 62907 TTCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGCCATGATTTACGAAGAGA 62848 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 ||| ||| ||||||| |||||| | || |||| ||||||| || || || || Sbjct 62847 CTCGCACTGTCTTGAAGACTTTCCTCGAAGGTGTCATCCGTGATGCTGTTACA-TACACA 62789 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| ||||| ||||| ||||| || | || |||| || || | || || ||| Sbjct 62788 GAACACGCAAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAA 62729 Query 16670 GGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | ||||| || || Sbjct 62728 GGCCGTACCCTATATGGGTTCGG 62706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074361580481