Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq56 358 2e-93 seq1 93.3 1e-13 >seq56 Length=135535 Score = 358 bits (396), Expect = 2e-93 Identities = 1074/1633 (66%), Gaps = 40/1633 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 119154 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 119095 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 119094 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 119035 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || || || | | || ||||| | ||||| Sbjct 119034 TGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 118976 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | ||||||||||| Sbjct 118975 TACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTT 118918 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| |||||||| |||||||| || ||||| || || Sbjct 118917 CGCGTCTTCAACAACACTGCCAGGTACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCA 118858 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || || || | ||||| |||||||| | || || Sbjct 118857 TTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAG 118798 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 118797 AACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 118738 Query 363964 CATTTTATGAAGCGCGTGG--AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | ||| ||||||||||| | | | | | | ||||| | ||| | || || |||| | Sbjct 118737 CTTTTCATGAAGCGCGTCGAAAAGAACG--GGGATTGGACCCTCATGTGTCCCAACGAGT 118680 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| ||||| |||||||| Sbjct 118679 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGC 118620 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| |||| | || | Sbjct 118619 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATACTCGAGT 118560 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| |||| ||||||| ||| | |||||| | ||| || Sbjct 118559 CCCAGACCGAGACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGGAAGAGCA 118500 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || | || || || |||| |||| | || || || || ||||| ||||| ||| Sbjct 118499 ACCAGAAGAATCTGGGAACCATTC-GCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 118441 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || || || || || || Sbjct 118440 TGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 118381 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 118380 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTGAC---TCAAGTGGTC 118324 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | ||||| ||| |||| || ||| || || || Sbjct 118323 GTCCGTAACCTCAACAAGATCATCGATGTCAATCATTACCCCATTGAGGAGGCTCGCAAC 118264 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || || |||| || Sbjct 118263 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTT 118209 Query 364487 TTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCT 364546 || | || ||| | || || || || || || |||| || || ||| | |||| Sbjct 118208 TTCTTGCCCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATCT 118149 Query 364547 TTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGGGA 364605 | || || || || || || |||| ||||| ||| ||| |||| | ||| || Sbjct 118148 TCGAGACCATTTACCACGCTGCCCTGACAGCTTCTCTTGAGCTGGCCAAAGAGCAA-GGC 118090 Query 364606 AAGTACTCTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 |||||||| | |||| || ||| | | | ||| || || || || | || Sbjct 118089 CCCTACTCTACCTTCAAGGGCTCTCCCGCCTCTGAAGGTGTTCTT-CAATTCGACATGTG 118031 Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC 364723 |||||||| ||| |||| ||| | ||||| | || | | | | | ||| ||| Sbjct 118030 GAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGC-AGATCAAGGAGC 117972 Query 364724 ATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCC 364783 | |||| ||||||||| | | || ||||||||||| || ||||| | || || | Sbjct 117971 ACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATTC 117912 Query 364784 TCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTT 364843 | || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 117911 TGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGG 117852 Query 364844 CCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGT 364903 | || ||||| | ||| || || | || |||||||||| ||| || || | Sbjct 117851 CTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTT 117792 Query 364904 GGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG 364963 || ||| |||||||||| ||||| |||| || ||||| | |||||||| || Sbjct 117791 GGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCA 117732 Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023 | || | || | ||| || | ||||| || || ||||| ||||| ||| | Sbjct 117731 ATGTCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCATG 117672 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 | || | ||||| ||||| |||||||| |||||| ||| ||||||| | ||||| Sbjct 117671 TTATCCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTTC 117612 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||||| | || || | |||| | || || ||||| || || ||||| | | Sbjct 117611 ACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGG 117552 Query 365144 GTCTTAAGACAGG 365156 |||| ||||| || Sbjct 117551 GTCTCAAGACGGG 117539 >seq1 Length=456006 Score = 93.3 bits (102), Expect = 1e-13 Identities = 297/454 (65%), Gaps = 9/454 (2%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || || |||| || || ||||| ||||| || || ||| | || || ||||| Sbjct 315274 GCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCGTCGATTTTCTGGCTC 315333 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || |||| | ||||| || || || || || || || | || ||| |||||| Sbjct 315334 AAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAG 315393 Query 22621 GGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATCATTCATAAA-CTTC 22678 ||| | || || |||||||| ||| || | | ||| ||| | | || | | Sbjct 315394 GGTTTGCACACAGATTTTGCATGTCTGTTGCACTCG----CATCTTAAGCACCGAGCCAG 315449 Query 22679 CATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTT 22738 || | ||| | | | |||||||| || | || |||| |||| | ||| | Sbjct 315450 CA-AGCAAATTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGA 315508 Query 22739 GCGAGGCGTTACCAGTAAG-TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATT 22797 |||||| | || || | |||| | || || || ||| | ||||| ||||||| Sbjct 315509 CCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATATT 315567 Query 22798 AAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTT 22857 ||||||| || ||||||||||| || |||| ||| | | |||| || || || Sbjct 315568 GAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGGTATACAAAACCGCC 315627 Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 || || || || | ||||| ||||| | | || ||||| || |||||||| || Sbjct 315628 AACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAG 315687 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 ||||||| ||||| ||||| || || ||||||| Sbjct 315688 CGAGTTGGAGAATATCAAAAGGCTGGCGTTATGG 315721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338286817094