Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq56 298 5e-76 seq181 132 5e-26 seq92 122 8e-23 seq47 113 4e-20 >seq56 Length=135535 Score = 298 bits (330), Expect = 5e-76 Identities = 939/1440 (65%), Gaps = 35/1440 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || ||||| ||||| ||| || | ||| |||||| | || Sbjct 117830 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 117889 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| |||| || || ||||| ||||| | ||| | |||||||||||| || | | Sbjct 117890 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 117949 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 117950 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 118009 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 | | || ||| | || | |||||||||| | || | || || || |||||| | Sbjct 118010 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAG 118069 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | |||| | ||| ||| |||||| ||||| | || ||| || Sbjct 118070 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTCAGGGCA 118129 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || ||||| |||||| |||||| |||||||| || || |||| | Sbjct 118130 GCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAG 118189 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 ||||||||||| | |||||| ||||| || ||||| | || || |||||||| ||| Sbjct 118190 GGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGA 118249 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 ||| ||||||||| | | ||| ||| || || || |||| ||||| || || Sbjct 118250 TGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTG 118309 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCC 145597 || | ||| || || || || | || | | | | ||| | ||||| | || | Sbjct 118310 TTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT 118369 Query 145598 TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 || | | | || || | | ||| | || ||||| || ||||| || ||| Sbjct 118370 TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCA 118429 Query 145658 TCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTTCCC 145714 || | | | | ||| | | |||||| | ||||| ||| ||| | ||||||||| Sbjct 118430 TCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC---GAATGGTTCCC 118486 Query 145715 AGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCA 145774 ||||| | ||| || || ||||||||||| || |||||||| ||||| | || ||| Sbjct 118487 AGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCC 118546 Query 145775 GTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACCTGCTGC 145831 ||||| ||| | ||| | || | || | || | ||| ||||| | || Sbjct 118547 GTCTCGGTCTGGGACTCGAGTATGGA---GTACCAGAGCTTCTGGGCACGAATAGTCTTG 118603 Query 145832 TGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAA 145891 || |||||||| || || ||| |||||| |||||||| | || |||||| Sbjct 118604 CGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAA 118663 Query 145892 TCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACG 145951 || | |||||| || |||| |||||||||||| || | ||| | ||||| | |||| Sbjct 118664 TCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACG 118723 Query 145952 CGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCG----CGCTTTGCA 146007 |||| ||| || | |||||| | |||||| || | | |||||| || ||| | Sbjct 118724 CGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTC- 118782 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGG 146067 |||| | | ||||| ||||| ||| | | | | ||| |||||||| || Sbjct 118783 TTCCTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGG 118839 Query 146068 TTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTAC 146124 || | |||| ||| | || || ||| ||||| |||||||| |||| || | Sbjct 118840 CTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGT-ACCTGG 118898 Query 146125 CA-TGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 || ||||||| |||||||| | |||||| || |||| ||| | ||||| || | Sbjct 118899 CAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGG 118958 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTAC 146242 || | |||| | || | || || || |||| ||||| ||| || ||| | | Sbjct 118959 CAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT-C 119017 Query 146243 TTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTC 146300 ||||| || ||| ||| ||| || |||||||| ||||||||||| ||| |||| Sbjct 119018 TTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTC 119077 Query 146301 GAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCAT--CGGCGTCCCCGCCGAGAACAA 146358 ||| ||| || || || || ||| || | ||| || || || || ||| | Sbjct 119078 --ATGTCGACTAGGAAACAGGAAGACAGCT--GACATTGGGGGGTACCAGCGTTGAAGAG 119133 Query 146359 CGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTC 146418 || || ||||| || || | || | | ||| | | || || || | | || Sbjct 119134 TGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCG 119193 Query 146419 TTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 || ||||| ||| || ||| || | || |||||||| | |||||| || || ||||| Sbjct 119194 TTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTC 119253 >seq181 Length=64741 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||||||||| | ||||| |||||| |||||||| || Sbjct 8143 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 8202 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||||| |||||||||||| || || ||||| || ||||| || ||| |||| Sbjct 8203 GCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTCGACTTG 8262 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | |||||| | ||||||| |||| |||| ||| || ||||| || || Sbjct 8263 ACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 8322 Query 131218 TTTACGAAAATCTGCATG 131235 || ||||| || |||||| Sbjct 8323 TTGACGAAGATTTGCATG 8340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || ||||| | || |||||||| ||||| ||||| ||| | Sbjct 7584 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 7643 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || || |||| | ||||||||||| || || Sbjct 7644 AAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 7703 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||| | | || | ||||| | ||| || | Sbjct 7704 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 7763 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | ||| || ||||| |||||||| Sbjct 7764 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 >seq92 Length=104316 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| || || | ||| |||||| || |||||||| |||||| Sbjct 34740 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 34799 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || || |||| | || ||||||||||| || Sbjct 34800 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 34859 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 34860 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 34919 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 34920 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq47 Length=141222 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| || ||| || |||||| ||||||||||| ||| ||| Sbjct 51571 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 51630 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || || || || || ||||| |||||| ||||| | | Sbjct 51631 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 51690 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | ||| || || || ||||| || |||| Sbjct 51691 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 51750 Query 131225 AA 131226 || Sbjct 51751 AA 51752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007389553280