Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq56 120 4e-22 >seq56 Length=135535 Score = 120 bits (132), Expect = 4e-22 Identities = 741/1179 (63%), Gaps = 30/1179 (3%) Strand=Plus/Plus Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 || ||| ||||| || | || |||||||||| |||||| |||| ||||| | | || Sbjct 118204 AAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 118263 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 | | ||| || ||| || |||| ||| | ||| || || || ||||| || | ||| Sbjct 118264 GTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGAC 118323 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------AC 62733 | |||| ||| || | || || | || || | || || ||| | || Sbjct 118324 GACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGAC 118383 Query 62734 AAA--CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 || || | || |||| ||| |||| || ||||| || ||||||| || | Sbjct 118384 GAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 118441 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || ||||| ||||| |||||| | |||||||| | ||| | || || Sbjct 118442 TACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTG 118501 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||||| |||| || |||||||| || || || || || | || || || |||| || Sbjct 118502 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGAC 118561 Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT-CTTTTCTCT 62970 || | || | | ||||| | || | | | |||| ||| | | ||| Sbjct 118562 TCGAGTATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGCCCTCA 118618 Query 62971 TTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | ||| | ||| | | | || ||||| || || | || |||| |||| Sbjct 118619 CGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCCAGGCCAG 118676 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 | || || | |||||||| | | ||| || |||| | | || || ||||| || | Sbjct 118677 GGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAA 118736 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 |||| || ||||| ||||| | || || || | | | | ||| || || || | Sbjct 118737 GATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGT 118796 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 ||||| | ||| || || | | | || | ||||| || || | ||| ||||| | Sbjct 118797 TCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAA 118856 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | ||||| || || || || ||||| || | ||| || || ||||| || | || | Sbjct 118857 ATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGC 118916 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | ||| ||||| || || ||||||||||| ||||| || | || || || | | Sbjct 118917 GAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAG 118976 Query 63327 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 |||| || | || | || || || || || ||||| || ||||| | || || Sbjct 118977 CACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGGCACA 119034 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 || | || || ||||| || || || || || ||| |||||| | ||| ||||| Sbjct 119035 GGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACA 119094 Query 63445 GCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 | ||||| | |||| | || || || || || | ||||| || ||||| || Sbjct 119095 GGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGT 119151 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 || || || | || | ||| ||||| | | | || || | | Sbjct 119152 GAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCA 119211 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||| || || || || ||||| | |||||||||||||| || ||||||||| ||| | Sbjct 119212 AATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAG 119271 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 ||| | | || ||| | |||| ||| || || ||||| || | || ||||||| Sbjct 119272 TTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCT 119331 Query 63682 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||| | || | |||| || | ||||| | ||| Sbjct 119332 GTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTTT 119370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624736993200