Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq181 107 2e-18 >seq181 Length=64741 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| || || || Sbjct 7810 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 7751 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || ||||| ||||| |||||||| Sbjct 7750 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GATAAGGAAGGCATTCCCCCTGACCA 7692 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || ||| | || |||| || ||| || ||| ||||| Sbjct 7691 GCAGCGACTCATCTTTGCTGGTAAGCAACTCGAGGATGGCCGAACTTTGTCCGACTACAA 7632 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || ||||| || || Sbjct 7631 TATTCAGAAGGAGTCTACTCTGCATTTGGTCCT 7599 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | ||||| || || ||| Sbjct 7582 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 7523 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || || | || | ||| || || || || || || |||||| Sbjct 7522 GATACCATCGA--CAATGTCAAATCCAAGATTCAG-GATAAGGAGGGCATCCCTCCTGAC 7466 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| ||| Sbjct 7465 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAC 7406 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 7405 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 7371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/206 (72%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| || |||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 8037 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 7979 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| || || || || || || ||||| Sbjct 7978 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCTCCTGAT 7922 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || || | ||||||| || || | ||| ||| Sbjct 7921 CAGCAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTAC 7862 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || |||||||| || || Sbjct 7861 AATATCCAGAAGGAATCCACCCTTCA 7836 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 8343 AACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTC 8284 Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||| ||||| || || || ||| | || | ||| ||||| || || ||||| || Sbjct 8283 GTCTGATACTATTGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAGGGAATTCCCCC 8227 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||| ||||| | || || || || || || | || || | |||||| | || Sbjct 8226 TGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGA 8167 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| ||||| || || || || || || Sbjct 8166 TTACAACATTCAGAAGGAGTCAACACTTCA 8137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323157153355