Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq159 132 1e-25 seq103 105 1e-17 >seq159 Length=74787 Score = 132 bits (146), Expect = 1e-25 Identities = 435/671 (65%), Gaps = 9/671 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || Sbjct 40669 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTAGCTCGTGCCATGCTCAGA 40610 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| | ||||| | ||| Sbjct 40609 AAAGCCGACGTGCTTCTCCTCGACGAACCTACCAATCATCTCGACGTCGCCAACATCGCC 40550 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 40549 TGGCTGGAGAACTACCTCAAGACTCACCCAAACATCACCAGTCTCATTGTTTCTCACGAC 40490 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 40489 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 40430 Query 279936 TCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | || ||| ||||||||| |||| || || | || || || ||| |||| Sbjct 40429 GC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTCGAGGTCCGTCCCGAAGCGAAGTCCTA 40371 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| |||| | | ||| || | ||| | || ||| || || |||| || Sbjct 40370 CTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTTCCTCCTCCGGGAATTCTCACCGG 40311 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| ||| || || || ||||| | | ||| || | | || ||||| Sbjct 40310 CGTCAAGTCACAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCAA 40251 Query 280115 TGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||||||| | || || || ||| || ||| | ||| || || || | Sbjct 40250 -GGCCCCAAAGCCCTC-GCTGTCCGAAGTCTCCTGTCAGCTGTCTCTGTCTTCTCGTGTG 40193 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | |||| || ||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 40192 GCCATCATCGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGCTGCTCACCGGTGAA 40133 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 40132 AGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAAG 40073 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||| Sbjct 40072 CAGCACGCTCTGGAGCACGTGGAGATGCACCTTGAGAAGACGCCGAACCAGTACCTCCAG 40013 Query 280350 TGGCGCTATGC 280360 ||||| ||||| Sbjct 40012 TGGCGATATGC 40002 >seq103 Length=100654 Score = 105 bits (116), Expect = 1e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||||||||||||| ||||| || ||||||||||| ||||| ||| || Sbjct 17566 TCTCGTATTGCTGTCATTGGACCCAACGGTGCTGGCAAGTCTACCCTTATCAATGTCTTG 17625 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || || |||| ||| |||| ||||| || || || Sbjct 17626 ACTGGTGAG-CTCATCCCTACCCAGGGTGAGATTTATCAGCACGAAAACATCCGTATTGC 17684 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||||||| ||| || || | Sbjct 17685 CTACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTCGACTCAACCCCATCTGA 17744 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 17745 GTACATCCAGTGGCG 17759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824723881197