Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq92 170 4e-37 seq181 143 5e-29 seq47 120 6e-22 seq56 102 2e-16 seq159 100 5e-16 >seq92 Length=104316 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 34740 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 34799 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || |||| ||| ||||| || ||| Sbjct 34800 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 34859 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 34860 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 34919 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 34920 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq181 Length=64741 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || || || || ||||| Sbjct 7584 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 7643 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||| || || || ||||||| || ||||| || ||| Sbjct 7644 AAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 7703 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| | ||| || ||||| || || | ||||| ||| Sbjct 7704 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 7763 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| |||||||| Sbjct 7764 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 Score = 136 bits (150), Expect = 7e-27 Identities = 167/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || || ||||| || || |||||| Sbjct 7812 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAG 7871 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || || Sbjct 7872 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 7931 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | |||||| ||||||||||| | || || || Sbjct 7932 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 7991 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || | |||||||| | ||| ||||| Sbjct 7992 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 8037 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || || ||||| ||||| || Sbjct 8113 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 8172 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 8173 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGA 8232 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || || || || | || || || Sbjct 8233 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACC 8292 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || ||||||||||||||||| || ||||| Sbjct 8293 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| || ||| || || | || ||||| | |||||| ||||| || Sbjct 7392 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 7451 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| ||||| || || ||||| ||||| || |||||||| | ||||| Sbjct 7452 ATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTG 7511 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||||||| || | ||||| ||||||||||| || || ||||| || | ||||||||| Sbjct 7512 TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 7571 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 7572 AAAATTTGCAT 7582 >seq47 Length=141222 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||||| || || | || || || | |||||| || ||||| || Sbjct 51573 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 51632 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| ||||||||||| || || | |||||| ||| Sbjct 51633 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 51692 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| || ||||||||||| Sbjct 51693 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 51751 >seq56 Length=135535 Score = 102 bits (112), Expect = 2e-16 Identities = 451/700 (64%), Gaps = 17/700 (2%) Strand=Plus/Plus Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979 ||| | |||||| | ||| | ||||||||| || || | | || || | ||| Sbjct 117625 CTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAACATGACGCTGAGA 117684 Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGAC-ACGTT 31038 | |||||| | |||||||||| ||||||| || | | ||| || || | ||| Sbjct 117685 AATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGA---CATTGGGGATGTT 117741 Query 31039 --GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACG 31096 | ||||| || | |||||| || ||||||||||||| || ||||| || Sbjct 117742 CTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCAT 117801 Query 31097 AGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCG 31156 | ||| ||| || | ||| || |||||| || |||| || ||||| | | || Sbjct 117802 ATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACG 117861 Query 31157 GCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGA-TTTGC 31214 ||| ||| | || || ||| ||||| | ||| ||| | || |||| ||||| Sbjct 117862 GCGCTGGTAAATGTTGGACGTGTATGGCTCAA-AGCACTCATTGTTACC-CAGAATTTGC 117919 Query 31215 GCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACC---CTTCTTG 31271 | ||| || ||||||||||| | ||| || ||| || | | ||| || |||| Sbjct 117920 GAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTG 117979 Query 31272 ACGCGCTCTTCGAGGGTCTTCCAGTCAAGGCGAGTTACC-GGCTCGGTTCCCCAGAGGTG 31330 | |||| | || | | ||| || | | | | |||| | ||| | || Sbjct 117980 ATCTGCTCCTTCAGATTGTCCCACTCCCA-CAACTCAGAAGGCTTGACATTCCACATGTC 118038 Query 31331 ATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTC 31390 | || | ||||| ||| |||||||| |||| ||||||| | ||| || ||||| Sbjct 118039 GAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTC 118098 Query 31391 TTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCG 31450 || || || || ||| || || || || |||||| |||| ||||||| | Sbjct 118099 TTTGGCCAGCTCAAGAGAAGCTGTCAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTT 118158 Query 31451 GTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGTCCT 31509 |||||| | |||| || ||| || || ||||||||||| ||||| | |||| Sbjct 118159 GTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-GGCAAGAAAAGCGTCGG 118217 Query 31510 GAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGG 31569 ||||||||| ||||| || || || || || | |||||||| || | ||||| Sbjct 118218 CAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCT 118277 Query 31570 GAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTT 31609 ||| | ||| |||| || ||| |||||| |||||| Sbjct 118278 CAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTT 118317 >seq159 Length=74787 Score = 100 bits (110), Expect = 5e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||||| ||||||||| || ||| | || ||||| |||| | || | Sbjct 40001 GGCATATCGCCACTGGAGGTACTGGTTCGGCGTCTTCTCAAGGTGCATCTCCACGTGCTC 40060 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 40061 CAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTG 40119 Query 225094 AGTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || ||| || |||||||| | ||||||||| || | |||||||||||| |||| Sbjct 40120 TGGTGGGGATGCTTTCACCGGTGAGCAGCTTGATGAGGGTGGACTTGCCCGCACCGTTGG 40179 Query 225153 GGCCAAT 225159 | || || Sbjct 40180 GCCCGAT 40186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611835903240