Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq56 300 3e-76 seq1 138 2e-27 >seq56 Length=135535 Score = 300 bits (332), Expect = 3e-76 Identities = 1114/1719 (65%), Gaps = 69/1719 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 117488 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 117547 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | | Sbjct 117548 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG--TAG 117599 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || | | | ||| | ||||| |||||| |||||||| |||| | || | Sbjct 117600 GATCCTTCATGT---GAACG---TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGT 117653 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | |||||||| ||| | | |||||| ||||| | | |||||||||| | || Sbjct 117654 CGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCT 117713 Query 243975 TGAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 ||| || |||||| | || | |||||||| | || || || | | | |||| | Sbjct 117714 TGATGTCGGCGGGGA--CATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCG 117771 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTG- 244090 | | |||| ||| ||| || |||| | || | || ||| || || ||| | Sbjct 117772 GTTCTTCATGGCATCAGACCAAAGACCCATATCGA-CGAGATCCTTGA---GGAGCCAGG 117827 Query 244091 --TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 || || ||||| || || || | || || ||||||||||| | |||| || | Sbjct 117828 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 117887 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||| | || ||| |||| ||||| || |||| || || || |||||||| | | Sbjct 117888 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGA 117947 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||| ||| | | |||||| || ||| | | || | || ||| |||| Sbjct 117948 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCC 118007 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 ||| | || ||| |||| ||||||||| || || || | | |||| | Sbjct 118008 ACAACTCAGA-AGGC--------TTGACATTCCACATGTCGAATTGAAGAA-CACCTT-C 118056 Query 244329 TGA--CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC--- 244382 || |||| ||||| | |||| | |||||| || | || || |||||||| | Sbjct 118057 AGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAG 118115 Query 244383 -AGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 |||| || ||||| |||| ||| |||||||||||||| |||||| | || ||| Sbjct 118116 AAGCTGTC----AGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGG 118171 Query 244442 GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCAC 244500 |||| | | |||||| |||| || || ||| | ||||||| || ||||| || Sbjct 118172 GCCTCGGGAGACTCGAAGGGCATGCGCAGGG-CAAGAAAAGCGTCGGCAAGACCCTGAAC 118230 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAA 244560 || | |||||||||| |||||| ||||| | || || | ||||||| Sbjct 118231 ACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATG 118290 Query 244561 GTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAG 244620 ||| | ||||| | |||||||||||| ||| || || | || ||| ||| Sbjct 118291 ATTGACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTT 118350 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||| |||||||| || | || | || || || || | ||||| Sbjct 118351 CTGGAAGTCGTAGC----GGCCTTCT------TTGTAGTCG--ACGAAGGCAGGCAGGGC 118398 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | ||||| |||||| || || ||||| || | | ||||| | ||||| || Sbjct 118399 AAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGT 118458 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| || ||| || ||||| ||||| | || || ||| ||| ||||||||| Sbjct 118459 GCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGC 118518 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||| ||||| ||||| || |||||| ||||| |||| | | || ||| Sbjct 118519 ATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCA 118578 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 ||| | | || | ||| |||| | |||||| ||| || ||| || Sbjct 118579 GAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAG 118638 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGA 244979 ||||| ||||| ||| || || | ||||| |||||| || ||| ||||||| Sbjct 118639 AGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT-CGTTGGGACACATGA 118697 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||| || ||| | | ||| | || |||||| || || |||||||| || || Sbjct 118698 GGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAA 118757 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 |||||||||| | | | | || ||| ||| |||||| | || || | ||||| Sbjct 118758 GGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGT 118817 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||| ||||| ||||||| ||||| | ||||| || | || || || ||||| |||| Sbjct 118818 CAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGC 118877 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 | |||||||| || ||| | || | |||||||| ||| || | || | |||||| Sbjct 118878 CGCCCTGGTCAACGTACCTGGC-AGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCG 118936 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || || ||||||||||| ||||| | ||| | | | || | | || | | Sbjct 118937 TTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTC 118996 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | || || || ||||||||| | ||| ||| |||||| ||||| || Sbjct 118997 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATA 119056 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || |||||||| |||||||| || || || ||||| |||||||| | |||| Sbjct 119057 CCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGG 119116 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | |||||| || || || ||||||||| ||| Sbjct 119117 GTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 119155 >seq1 Length=456006 Score = 138 bits (152), Expect = 2e-27 Identities = 306/445 (69%), Gaps = 13/445 (3%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || || | || || ||||||||||||||| || ||||| Sbjct 315256 TTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 315315 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || || || |||||||||||| || ||| | ||||||||| ||||||||||| ||||| Sbjct 315316 GCGTCGATTTTCTGGCTCAAGAAGCGTGGTCT-GATGCCCGGCCTCACCTTCTCTAACGA 315374 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| ||| | | || ||||| |||| | || ||||| || || || |||| || Sbjct 315375 ACTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCG---CA 315431 Query 42872 CCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | ||| | |||| | ||| | ||| || || ||||| || || || | | Sbjct 315432 TCTTAAGCACCGAGCCAGC-AAGCAAATTATCCAGGATATTATCACCGACGCTGTTGGCA 315490 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC 42989 | ||| | ||||| | || || | ||| |||||| | || | ||||||||| | Sbjct 315491 TTGAGCAAGAGTTTTTGACCGAGGCTCTG-CCGTGTGCTCTCCTAGGCATGAACGCCACA 315549 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCA 43047 || ||| |||| || || | | |||||||| | ||| | || || | ||| | Sbjct 315550 CTAATGAAGCAA-TATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACG 315607 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | ||||| || | ||||||||| || ||||||||||| || |||| |||| Sbjct 315608 AAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCA 315667 Query 43108 AGACCAACTTTTTCGAGAAGCGCGT 43132 |||| ||||| ||||||||||| || Sbjct 315668 AGACAAACTTCTTCGAGAAGCGAGT 315692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328375511920