Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq320 86.0 6e-12 >seq320 Length=33747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 20416 GTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAAT 20475 ||||||||||| ||| ||||| | | |||| ||| || || || || || | | Sbjct 13101 GTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAATCAC 13160 Query 20476 GTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGC 20535 || | | ||||| | |||| ||| || ||||| | | || || | |||| | || Sbjct 13161 GTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGATGTACTCTGC 13220 Query 20536 CCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGC 20595 |||||||||| ||| ||||| ||||| || ||||||| ||| || | | ||| | Sbjct 13221 GCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCGCGGTGTGT 13280 Query 20596 CAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 || || | | | |||||||| | ||| ||||| ||||||||| ||||| || Sbjct 13281 GAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 13337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441367740764280