Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq103 84.2 5e-11 >seq103 Length=100654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 ||| || || |||| ||| | || ||||| ||||| || || || || || | || Sbjct 16923 GGGAAAACCCTCAACCTGCTCATTATTGATAGCACGCATGAGGGTGGACTTTCCAGATCC 16864 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 || || ||||| |||||||| || | |||||||||||| | | || | ||| || Sbjct 16863 ATTAGGACCACAGAGACCGTAACGCTGACCACGCTTCAGACGCAGGTGAGTTTGGTTGAG 16804 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || |||||||| || |||| ||| |||||||| || Sbjct 16803 AAGAATCTTAGCACCGTAGGCCAGAGAGAAGGTGCAATTACAAAGATCCTCGCC 16750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867042193950