Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq56 295 8e-75 seq1 109 7e-19 seq195 91.5 2e-13 >seq56 Length=135535 Score = 295 bits (326), Expect = 8e-75 Identities = 1137/1772 (64%), Gaps = 33/1772 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 117492 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 117551 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 117552 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 117611 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | ||||| || ||||| ||| || || || || ||||| | || | Sbjct 117612 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAA 117671 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| ||||| ||||||| ||| || || | |||| || Sbjct 117672 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACAT 117731 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 117732 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 117788 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 117789 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 117848 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 117849 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 117908 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 ||| ||||| | ||| ||||| ||||||||||| || | || | ||| || | || Sbjct 117909 CCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 117968 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 114099 | | ||| | || | ||||| || |||||| || | | || | || | Sbjct 117969 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 118026 Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 | |||||| || || || || | ||||| ||||| || || |||| || || ||| Sbjct 118027 ATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 118086 Query 114160 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 114215 ||||| | | | |||| || | |||| | ||||| ||||| || || | Sbjct 118087 GGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC----AGGGCAGCGTGGTAAATGG 118142 Query 114216 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA 114275 |||| || || | || | | ||||||| || || || | | || Sbjct 118143 TCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGG 118202 Query 114276 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 114335 || ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 118203 CAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGC 118262 Query 114336 ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 114395 || ||||| ||| | ||| ||| ||| |||||| | | | || || || | Sbjct 118263 TGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGA 118322 Query 114396 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-G 114454 ||| || | || | || || ||||| | | | || | | || ||| | | | | Sbjct 118323 CGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCG 118381 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 || | ||| ||||| | || |||| || || |||| |||||| || | Sbjct 118382 ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 118441 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| || || ||||| |||| ||| || || |||||| |||| ||||| || || Sbjct 118442 TACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTG 118501 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| |||| || ||||||||||| ||||| | || | |||||||| || |||||| Sbjct 118502 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGAC 118561 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 114693 | ||| || | | ||||| | || | ||| | | ||| | | | || ||||| Sbjct 118562 TCGAGTATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACG 118620 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 ||| ||||| |||||| || |||||||| || || | || | || || || Sbjct 118621 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCA 118680 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 || | || || | ||| | ||| | || || || || ||||||||||| || || Sbjct 118681 CTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATC 118740 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 ||||||||| ||||| |||||| || ||| || |||||| | || || || Sbjct 118741 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 118800 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 118801 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGC 118860 Query 114934 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAG 114990 || || | || |||||| || ||||| || ||| || || |||||||| Sbjct 118861 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAG 118920 Query 114991 CATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCT 115050 ||| |||||||| || | ||| || || || || ||| ||| | || | Sbjct 118921 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACG 118980 Query 115051 GACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 115110 || |||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 118981 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 119040 Query 115111 GAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA 115170 |||| || ||||||| ||||| || ||| |||| | ||| ||||| ||| || Sbjct 119041 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 119100 Query 115171 CATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228 || || | || || ||||||||||||||||| || |||| |||||| ||| | | Sbjct 119101 CA--GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGA 119156 Query 115229 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 115286 |||| |||||| | |||||||||||| ||| ||||| || || ||||| Sbjct 119157 GCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATAC 119216 Query 115287 CGATCGAGACCCGCATAAACATGTATTGGGGT 115318 ||| || || ||||||| ||||| || ||| Sbjct 119217 CGACCGCAACGCGCATAATCATGTGCTGAGGT 119248 >seq1 Length=456006 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294 Query 126167 CCCTCCACACACGCGAACGC 126186 ||||||||| ||||| || Sbjct 315293 CCCTCCACAGCAGCGAAAGC 315274 >seq195 Length=57600 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 54640 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54585 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | ||||| |||||||||| ||||||||| ||||| ||||| ||||| | || || Sbjct 54584 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 54526 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 54525 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 54466 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || || | ||||| |||| | |||| | | ||||||| Sbjct 54465 GTCTTCCCCGTTCCTGGAGGTCCGACCAGAAGAACACC-CTTGGGCAACTTGGCACC 54410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346752834360