Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq56 253 2e-62 >seq56 Length=135535 Score = 253 bits (280), Expect = 2e-62 Identities = 1108/1727 (64%), Gaps = 76/1727 (4%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | | | Sbjct 119313 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTC 119254 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| || |||| ||| || || |||| | Sbjct 119253 GAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATT--G 119196 Query 93844 AATG--TTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGA 93901 || | ||||| | | | | |||| |||| | ||| ||| | || | Sbjct 119195 AACGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTA 119136 Query 93902 CCCTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCTGAT-GAC 93956 | || |||||||| || ||||| ||| ||| ||||||| |||||||| | ||| Sbjct 119135 CACTCTTCAACGCTGGTACCCC----CCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGAC 119080 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| |||| ||| ||| || | ||||| |||||| |||||| | ||||| Sbjct 119079 -ATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTC 119021 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || || || ||||| | | |||||| | | ||||| | || || ||||| Sbjct 119020 CAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACAT 118961 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| ||||| || || ||||||||| || | || ||||| || |||||||||||| | Sbjct 118960 TGCCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACAC 118901 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | ||||| |||||||| || | | | ||| | || || |||| ||||| Sbjct 118900 TGCCAGGTACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGA 118841 Query 94197 GCCCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 ||| |||||||| |||||| | ||||| | || ||||||||||||||||||| || Sbjct 118840 GCCTTGGCACGCAGACGTGTTTGACTTTC-TTGATTTGCGAAAGAACCACGGCAAGGAAG 118782 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 | | || | ||||||||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 118781 AAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCG 118722 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 |||| || ||| | |||| || | |||||||| || || || || ||| | || Sbjct 118721 TCGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA-- 118664 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA--------ATCG-CAGGGCA 94426 ||| || || || || || | |||| ||||| | || ||||| Sbjct 118663 -TTG-CTATGGC-----GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCC 118611 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | | ||| ||| ||| |||||| ||| | || | || ||| | Sbjct 118610 GTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCG 118551 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 ||||||| | |||| || ||| |||||| | |||| ||| ||||||| || Sbjct 118550 AGACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGA 118491 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || || ||||| ||||||||||| ||||| | ||||| | | || | Sbjct 118490 ATCTGGGAACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTG 118431 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| ||||||| || ||| ||| ||| | |||| | | ||||| ||| || Sbjct 118430 ATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CT 118377 Query 94667 AC-ACGTCTACTGCTTCG--TTC---GATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-G 94719 || | | | ||| || ||| | || | ||| ||| ||| ||| | Sbjct 118376 ACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAG---GTG-ACT------CAAGTG 118327 Query 94720 ATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG 94779 | ||| ||||| |||| | | ||||| || |||||| | |||||| Sbjct 118326 GTCGTCCGTAACCTCAACAAGATCATCGATGTCAATCATTACCCCATTGAGGAGGCTCGC 118267 Query 94780 AACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTG 94839 ||| ||| || ||||| |||||||| | || || |||||| | || ||||| | Sbjct 118266 AACAGCAACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTT 118207 Query 94840 GTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTC 94899 | |||| |||||| ||| ||| ||| || | | || | | || ||| Sbjct 118206 CTTGCCCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATCTTC 118147 Query 94900 GAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 || | |||||| ||| ||| ||| | || | | |||||| | | | ||| Sbjct 118146 GAGACCATTTACCACGCTGCCCTGACAGCTTCTCTTGAGCTGGCCAAAGAGCAAGGC--- 118090 Query 94960 CCACACGAATCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || || | ||| || || | ||| ||| || || |||| |||||| | Sbjct 118089 CCCTACTCTACCTTCAAGGGCTCTCCCGCCTCTGAA---GGTGTTCTTCAATTCGACATG 118033 Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCA 95074 ||| ||| ||||| || | ||| || |||| || || | | || || | | Sbjct 118032 TGGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGCAGA--TCAAGG 117975 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | |||||| | ||| || |||| | || ||||||||||| ||||| || |||| | Sbjct 117974 AGCACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAA 117915 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | || || ||||| |||| || || || | ||| |||||| | ||| | | || || Sbjct 117914 TTCTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCT 117855 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGG 95252 | || || ||||||| ||| ||||| ||||| ||| || |||| | |||| Sbjct 117854 TGGCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCT--CGTCGATATGGG 117797 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | | ||| ||| | ||||||| | | || ||||| ||| | |||||||| Sbjct 117796 TCTTTGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACAT 117737 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 ||| | | || | ||||||||||| ||||||||||| || |||||||| | ||||| Sbjct 117736 CCCCAATGTCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCG 117677 Query 95373 -CGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | || || || | || |||| |||||| |||| ||| |||| Sbjct 117676 TCATGTTA-TCCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAG 117631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717529235320