Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq56 226 3e-54 seq92 107 2e-18 seq181 98.7 1e-15 seq1 82.4 8e-11 >seq56 Length=135535 Score = 226 bits (250), Expect = 3e-54 Identities = 929/1450 (64%), Gaps = 41/1450 (3%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 117828 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 117887 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | || | ||||| |||||| || | Sbjct 117888 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGA 117947 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || ||| || || || | |||||| | || | ||||||| | ||| |||| Sbjct 117948 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCC 118007 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 ||| | | || || | | |||||||||||| | || | || ||| | ||||||| Sbjct 118008 ACAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAG 118067 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTC----GCAGCTAGCCTCG 153323 ||| || ||| |||| ||| | || |||||| || | |||| | Sbjct 118068 AGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC---- 118123 Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGC 153381 || || | | ||| ||||| ||| |||||| || ||||| |||| || || Sbjct 118124 AGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGG--GCCTCGGGAG 118181 Query 153382 TCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| | ||| |||||||| |||||||| | ||| || |||| Sbjct 118182 ACTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGA 118241 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||||||||| | ||||||| | || | | ||||| || |||||| ||||| Sbjct 118242 TGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGA 118301 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||||||||| || || ||||||| ||| | | | | || |||| ||| || | Sbjct 118302 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT 118361 Query 153562 AG-GTCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGA 153618 || | | | || || | || ||| | | || ||||| ||| |||| || || | Sbjct 118362 AGCGGCCTTCTTTGTAGTCG---ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAA 118418 Query 153619 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATT 153675 | || ||| || | | | | ||||| | |||||| | ||| || || ||||| Sbjct 118419 CAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC--- 118475 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 ||| |||| ||| | ||| ||||| || | ||||| || || ||| | ||||| Sbjct 118476 GAATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAA 118535 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCA 153795 | || ||| |||||| || | |||| || | || | ||| || || | Sbjct 118536 AGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGCACGAA 118595 Query 153796 CCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGC 153855 || || |||||||| | ||| || |||||| || ||||||||| |||| Sbjct 118596 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGC 118655 Query 153856 CGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGG 153915 | ||||| || || ||||| || |||| | |||||||| || | ||| ||| || Sbjct 118656 CATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGT 118712 Query 153916 CGTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 || |||||| |||||| ||||| || | ||| || || | ||||||||| | Sbjct 118713 TCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 118772 Query 153973 CCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGT 154032 | | || ||| ||| ||| | || || || | | | | | ||| |||| Sbjct 118773 CACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGT 118832 Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGT 154089 |||| || || | ||||| ||| | ||||| ||| || |||||||| || |||| Sbjct 118833 GCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGT 118892 Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGG 154149 | | | |||||||||||||| | |||||| | |||| | | || ||||||| Sbjct 118893 ACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGG 118952 Query 154150 TCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-G 154208 | || | |||| || || | | || ||||| | ||| || || || | Sbjct 118953 TGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAG 119012 Query 154209 CCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCG 154268 || | ||| || || || ||| || || |||||| ||||| ||||| ||| Sbjct 119013 CCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCG 119071 Query 154269 TCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA-AT--GCGCGTTCCCGCCGAA 154325 || | | ||| | |||||| ||| ||| || || || | | || || || Sbjct 119072 TCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTG 119128 Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385 ||||| || || ||||| || || || || | ||| | | |||| || || | Sbjct 119129 AAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAA 119188 Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445 || ||| || | || || ||| |||| ||| |||||||| | ||||||||| || Sbjct 119189 ACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGT 119248 Query 154446 CGTTCGGCGA 154455 || ||| ||| Sbjct 119249 CGCTCGACGA 119258 >seq92 Length=104316 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || || ||||| || ||||| | | | Sbjct 34775 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAA 34834 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || || || |||||||| || || || || ||||| ||| || || | | Sbjct 34835 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 34894 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || ||||| || Sbjct 34895 GTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 34954 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 34955 GAAAATCTGCAT 34966 >seq181 Length=64741 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || ||||| | | |||||||| ||||| ||||||||| | Sbjct 7584 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 7643 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| ||||| | | |||| || ||||| ||||| || || Sbjct 7644 AAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 7703 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | |||| | || | || || | || || || Sbjct 7704 ATGCCTTCCTTATC-TTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAAC 7762 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 7763 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||| || | ||| || ||||||||| || || || | Sbjct 8144 TTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAG 8203 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 ||||||||||||| ||||| || || || || || ||||| ||| | || | || Sbjct 8204 CGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC-CTGAATCTTCGACTTG 8262 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | || || | |||||| ||||||| || | || || || || || || Sbjct 8263 ACATTG-TCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGT 8321 Query 138597 TTTTACAAAAATCTGCATGG 138616 || || || || ||||||| Sbjct 8322 CTTGACGAAGATTTGCATGG 8341 >seq1 Length=456006 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTG 52693 |||||||| || | || |||||| | || || ||||||||||| || | ||| Sbjct 315499 GAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTA-ATGAA 315557 Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGGCAGCCAAAGTACT 52752 | || || || ||||| || |||||||| ||||| ||| || || | |||| | Sbjct 315558 GCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACGAAAAGGTAT 315616 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG-GGCAAGACCAAC 52811 ||| | ||| || || || || ||| | |||||||| |||| | |||||||| ||| Sbjct 315617 ACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTC-CTTGGGTGGCAAGACAAAC 315675 Query 52812 TTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 || |||||||||||||| || || ||| Sbjct 315676 TTCTTCGAGAAGCGAGTTGGAGAATAT 315702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256711592240