Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq92 120 3e-22 seq47 116 4e-21 seq181 104 2e-17 seq56 100 3e-16 seq1 100 3e-16 >seq92 Length=104316 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| |||| | Sbjct 34740 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 34799 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||| ||||| || || || Sbjct 34800 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 34859 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| || | |||||| | | ||| || Sbjct 34860 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 34918 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || || ||||| || ||||||||||| Sbjct 34919 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq47 Length=141222 Score = 116 bits (128), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || || ||| || || ||||| || |||||| ||||| Sbjct 51573 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 51632 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || |||||||||||||| |||||| ||||| | ||| Sbjct 51633 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 51692 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 51693 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 51752 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 51753 --CTGAATGGTGTATT 51766 >seq181 Length=64741 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||| ||| | || || ||| || ||||| || ||| Sbjct 7842 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 7901 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| || |||||||| ||| || ||| |||| Sbjct 7902 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 7961 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||||| ||| Sbjct 7962 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 8021 Query 127097 TTTACAAAAATCTGCAT 127113 || |||| || ||||| Sbjct 8022 TTGACAACTAT-TGCAT 8037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | |||||||| || ||||||||||| ||| | Sbjct 7584 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 7643 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || ||||| |||| | ||||||||| || || || Sbjct 7644 AAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 7703 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || || ||| | | |||| || |||| || ||| Sbjct 7704 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 7763 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||| || || || |||||||| Sbjct 7764 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | ||||| || || ||||| |||||| Sbjct 8143 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 8202 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || |||||||||||| || ||| |||| Sbjct 8203 GCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTCGACTTG 8262 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | |||||| |||| || | || |||||||| || || Sbjct 8263 ACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 8322 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 8323 TTGACGAAGATTTGCATGG 8341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || || || ||||| |||| || |||||| || || ||||| ||||| || | Sbjct 7392 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 7451 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||| ||||| || ||||| ||||||||||| ||| || || |||| | Sbjct 7452 ATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTG 7511 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 |||| ||| || | | |||||||| | ||| | || || || |||| || || ||| Sbjct 7512 TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 7571 Query 127103 AAAATCTGCAT 127113 ||||| ||||| Sbjct 7572 AAAATTTGCAT 7582 >seq56 Length=135535 Score = 100 bits (110), Expect = 3e-16 Identities = 1091/1747 (62%), Gaps = 66/1747 (4%) Strand=Plus/Plus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTAT--CATGC 145909 || || || ||| ||| || || || | | | |||||||||||||| | || |||| Sbjct 117617 TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAACATG- 117675 Query 145910 ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT--GCTGGGGTATTTC 145967 || ||| ||| ||||| | || || ||||| |||||| || || ||| ||| Sbjct 117676 ACGCTGAGA-AATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACATTGG 117734 Query 145968 GTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTA 146027 | |||||||| | || || || ||||| | || ||| || | || | Sbjct 117735 GG--ATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCA 117792 Query 146028 AATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGC 146087 || || || ||||| |||||| ||| | ||||||| ||||| || || || || Sbjct 117793 AAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGC 117852 Query 146088 GAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAG 146147 | || || | | | || | |||| ||| | ||||| || |||| |||||||| || Sbjct 117853 CAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAG 117912 Query 146148 TATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || |||| || | ||||| |||||| || | |||||| ||||| | | ||||| Sbjct 117913 AATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTG 117972 Query 146208 -TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATAT 146266 || |||| ||| ||| || ||| ||| | |||||| | | | || | || || Sbjct 117973 CTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCACAACTCA---GAAGGCTTGACAT 118028 Query 146267 TGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGT-ACGATTCATAA 146325 | | ||||| | || | | || | ||| || | | | | | | | | Sbjct 118029 TCCACATGTCGAATTGAAGAACACCTTC--AGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 118086 Query 146326 GGACCGTCGATCTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTC 146384 || | | | |||| |||||| || |||| ||| || | ||| |||||||| Sbjct 118087 GGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTCAGGGCAGCGTGGTAAATGGTCTC 118146 Query 146385 CGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCA 146443 ||| | ||||| |||| | |||||| ||| |||| || || | Sbjct 118147 GAAGATTTGCTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGGCAA 118205 Query 146444 CAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGT 146503 ||| |||||||| |||||||| | || ||||| | ||| || ||| | |||| |||| Sbjct 118206 GAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGT 118265 Query 146504 TCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGA 146563 | ||| || || |||| || || ||| ||||||||||||||||| ||||| |||| Sbjct 118266 TGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGACGA 118325 Query 146564 CAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTGA 146620 | | || |||| | || | ||| | || | | || || || || || Sbjct 118326 CCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT-AGCGGCCTTCTTTGTA--GTCGA 118382 Query 146621 CGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAAT 146680 || | | ||| | |||||||||||| || || ||| ||| || | | || | Sbjct 118383 CGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGT 118442 Query 146681 ACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttttGGT 146737 ||| | ||||| | ||| || || ||||| ||| | |||| ||| || |||| Sbjct 118443 ACTCAATGATCTCCGTGCACAGATTAGAGCTGC---GAATGGTTCCCAGATTCTTCTGGT 118499 Query 146738 TACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGG 146797 | || | ||||||||| |||||||| ||||| | || || || ||| | || Sbjct 118500 TGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGG 118559 Query 146798 TCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATT 146855 ||||| ||| | | || | | ||||| | | | ||||| || || | | Sbjct 118560 ACTCGAGTATGGA--GTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTC 118617 Query 146856 CTTTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCG 146913 || || |||||||| | ||||| || | || || || ||||| Sbjct 118618 ACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCG--CCATAGCAATCAGCCAGGCCA 118675 Query 146914 GGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAAC 146973 || ||| |||||||| | || | ||| || |||| | ||||| | ||| || Sbjct 118676 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAA 118735 Query 146974 AAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATG 147033 | ||| || ||||| || | || | | ||||||||| | || || ||| | Sbjct 118736 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGG 118795 Query 147034 TTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCG 147093 || || ||| | || | || | | || | ||||||||||| | ||| ||| Sbjct 118796 TTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 118855 Query 147094 AGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACT 147150 | ||| || ||||||| |||||||| || |||| | | |||| |||||||| Sbjct 118856 AATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACG 118915 Query 147151 CGTAACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTA------TTGA 147198 || | ||||| | || |||| |||| | |||||||| |||| | Sbjct 118916 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTA 118975 Query 147199 GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA- 147257 || | || || || ||| ||| |||| ||| || ||| || || |||| || | Sbjct 118976 GCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAG 119035 Query 147258 CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACA 147317 || || | || | |||||| ||||| |||||||| ||||| ||| |||||||| Sbjct 119036 GTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACA 119094 Query 147318 CGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAA 147377 ||| ||| || | || || || || || || || |||||| ||||| Sbjct 119095 GGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAA 119154 Query 147378 ---CGTGCCCAGACTCATCAATTGATACGTTTC--AATGGCGCTCATAACGTCATCGCCG 147432 | || | || ||| | || || || || || ||| || || || || || Sbjct 119155 GAGCTTG-CTGGA--CATGAGGTGGTAGGTCTCCAAAACGCGTTC--AATGTTGTCTCCC 119209 Query 147433 TGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTG 147492 ||| | | || |||||||| | ||||||||| ||||| || | ||| | | ||| Sbjct 119210 CAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTG 119269 Query 147493 ACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCC 147552 | ||| | |||||| | |||||| ||||| |||||||| | |||| | |||| Sbjct 119270 AGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCT 119329 Query 147553 CTGTTGT 147559 |||| || Sbjct 119330 CTGTCGT 119336 >seq1 Length=456006 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || || | ||||||| |||||||| ||||||||||||| || | | | Sbjct 315476 CCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAG 315535 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT- 47471 | |||||||| | |||| | || || |||||||||||||| || || | ||| Sbjct 315536 GCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTG 315595 Query 47472 CA---GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAAC 47528 || | ||| | | ||| | ||| | |||| || || ||||| || ||| | ||| Sbjct 315596 CACTTGGTAACGAA----AAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAAC 315651 Query 47529 ATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 ||||| | | |||||||| ||||| ||||||||||| || || |||||| || Sbjct 315652 ATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 315705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495349572080