Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq56 286 4e-72 seq1 113 6e-20 seq195 89.7 6e-13 >seq56 Length=135535 Score = 286 bits (316), Expect = 4e-72 Identities = 1139/1773 (64%), Gaps = 35/1773 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 117492 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 117551 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 117552 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 117611 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||| | ||||| || ||||| ||| || || || || ||||| | || | Sbjct 117612 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAA 117671 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| ||||| ||||||| ||| || || | |||| || Sbjct 117672 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACAT 117731 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || || || ||| || | | |||| | | |||||| | | | Sbjct 117732 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 117788 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 117789 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 117848 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 117849 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 117908 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| ||||| | || ||||| ||||||||||| || | || | |||||| | || Sbjct 117909 CCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 117968 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 116060 | | || | || | ||||| || |||||| || | | || | || | Sbjct 117969 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 118026 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || || || || | ||||| || || || || |||| || || || Sbjct 118027 ATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 118086 Query 116121 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176 ||||| | | | |||| || | |||| | ||||| ||||| || || | Sbjct 118087 GGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC----AGGGCAGCGTGGTAAATGG 118142 Query 116177 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACA 116236 |||| || || | || | | ||||||| || || || | | || Sbjct 118143 TCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGG 118202 Query 116237 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296 || ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 118203 CAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGC 118262 Query 116297 ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 || ||||| ||| | ||| ||| ||| |||||| | | | || || || | Sbjct 118263 TGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGA 118322 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-G 116415 ||| || | || | || || ||||| | | | || | | || ||| | | | | Sbjct 118323 CGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCG 118381 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 || | ||| ||||| | || |||| || || |||| |||||| || | Sbjct 118382 ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 118441 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||| || || ||||| |||| ||| || || |||||| |||| ||||| || || Sbjct 118442 TACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTG 118501 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||| |||| || ||||||||||| |||||| | || | |||||||| || |||||| Sbjct 118502 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGAC 118561 Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 116654 | ||| || | | ||| | | || | ||| | | ||| | | | || ||||| Sbjct 118562 TCGAGTATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACG 118620 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTG 116713 ||| ||||| |||||| ||||||||||| || ||| ||| || | || || || Sbjct 118621 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTC-GCCATAGCAATCAGCCAGGCCAGGGC 118679 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || | ||||| | ||| | ||| | || || || || ||||||||||| || | Sbjct 118680 ACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGAT 118739 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 |||||||||| || || |||||| || ||| || |||||| | || || || Sbjct 118740 CTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCT 118799 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 118800 TTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATG 118859 Query 116894 -ACC-CCTTGC-GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 ||| | || | || |||||| || ||||| || || ||| || ||||||| Sbjct 118860 CACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAA 118919 Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTC 117010 |||| |||||||| || | ||| || || || || ||| ||| | | || | Sbjct 118920 GCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC 118979 Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070 || ||||| || || || ||||| || ||| ||| ||||| || || | Sbjct 118980 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 119039 Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130 ||||| || ||||||| || || || ||| |||| | ||| ||||| ||| | Sbjct 119040 TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAG 119099 Query 117131 ACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 117188 ||| || | || || ||||||||||||||||| || |||| |||||| ||| | Sbjct 119100 ACA--GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AG 119155 Query 117189 ACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | |||| |||||| | |||||||||||| || ||||| || || |||| Sbjct 119156 AGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATA 119215 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 |||| | || ||||||| ||||| || ||| Sbjct 119216 CCGACCGCAACGCGCATAATCATGTGCTGAGGT 119248 >seq1 Length=456006 Score = 113 bits (124), Expect = 6e-20 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGT-ATCA 127696 ||||||||| ||||| || | | |||| ||| | ||| ||| | |||| | | Sbjct 315293 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGC---GAAGCTGGAATCCTTGTCCTGA 315237 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | ||| || ||||| | ||| |||||| ||| || ||||| Sbjct 315236 ATCCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGGGAC 315193 >seq195 Length=57600 Score = 89.7 bits (98), Expect = 6e-13 Identities = 223/333 (67%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAA 12930 ||| | ||| || | |||||| ||||||| ||| | || ||| ||| |||| Sbjct 54640 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54585 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 54584 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 54526 Query 12991 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 54525 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 54466 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 13108 ||||||||||| ||||| || | ||||| |||| | |||| | | ||||||| Sbjct 54465 GTCTTCCCCGTTCCTGGAGGTCCGACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 54407 Query 13109 TCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGC 13168 | || || ||||| | || ||||| || || | ||||| | || ||||| || Sbjct 54406 GTCGGAGAAGTTTTCGGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 54347 Query 13169 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 13201 | || || | ||||| ||||| || || Sbjct 54346 CTCATCACAACCGTGCACGTCGCTGAATCGAGT 54314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500167673720