Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq56 127 3e-24 >seq56 Length=135535 Score = 127 bits (140), Expect = 3e-24 Identities = 444/678 (65%), Gaps = 14/678 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 117485 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 117542 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 117543 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 117602 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||||| ||| || |||||| |||||||| |||||| || || || |||||| Sbjct 117603 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGGTCGGCGGCC 117661 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || |||||| | | | || ||| Sbjct 117662 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCG 117721 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || |||| | | || ||| || || ||||| ||||| || | | || || | Sbjct 117722 GCGGGGACAT-TGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 117780 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 117781 GGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 117840 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 117841 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 117900 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | ||| ||| |||||||||||||| || |||| ||||| Sbjct 117901 ATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 117960 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || || | || | Sbjct 117961 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAAG 118019 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || |||||||||||| |||| | |||| | | | || ||||||| | | Sbjct 118020 GCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGG 118079 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAG--GCGGCCATGGCGTGATAGTA 204495 | | || || | ||||| ||||||| || ||| || | || ||| | ||| Sbjct 118080 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCT--CAAGAGAAGCTGTCAGGGCAGCGTGGTA 118137 Query 204496 CATGGTCTCAAAGATCTG 204513 |||||||| ||||| || Sbjct 118138 AATGGTCTCGAAGATTTG 118155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146085533520