Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 159 3e-34 seq92 134 1e-26 seq47 105 7e-18 seq181 86.0 6e-12 >seq1 Length=456006 Score = 159 bits (176), Expect = 3e-34 Identities = 360/524 (69%), Gaps = 24/524 (5%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| || || || || || || | Sbjct 315720 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACC 315661 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| | | Sbjct 315660 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTT-AC 315602 Query 132711 CAGGT-CGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 || || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 315601 CAAGTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGT 315542 Query 132769 TTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 | | | || || ||| |||| |||||| || ||||| | ||| |||||| ||| | || Sbjct 315541 TCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAAC 315484 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATGC 132882 |||||||||| || ||| ||| || || | |||||| ||| | |||| Sbjct 315483 AGCGTCGGTGATAATATCCTGGATAATTTGCTTGCTG-GCTCGG----TGCTTAAGATGC 315429 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | || || || ||||| || ||||| ||||| || | ||| || |||||||| Sbjct 315428 GAGTGCAACAGACATGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTA 315369 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| || | ||||||||| || || || || |||||||| || || || || || | Sbjct 315368 GAGAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAAT--CGACGCAAAGG 315311 Query 133003 C-CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 | ||| ||||||| |||||| || || ||||||||||||| ||||| | |||| ||| Sbjct 315310 CACCGCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGG 315251 Query 133061 CTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 || ||| ||| ||||| || | ||||| || || |||| Sbjct 315250 AATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTT 315209 Score = 104 bits (114), Expect = 2e-17 Identities = 189/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | ||||| ||| || || |||| ||||| | |||||||| ||| || || Sbjct 315089 GTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAA 315030 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | || || Sbjct 315029 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTT 314970 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || |||| | ||| ||| || | Sbjct 314969 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATAAAGTATTT 314910 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | ||| || Sbjct 314909 CTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTC 314850 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || || ||||| Sbjct 314849 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACAT 314814 >seq92 Length=104316 Score = 134 bits (148), Expect = 1e-26 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 34969 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 34910 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 34909 TCCGACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 34851 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||||| | |||||| Sbjct 34850 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTGAGCGACTA 34791 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 34790 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 34752 >seq47 Length=141222 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 51751 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 51692 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 51691 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 51632 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 51631 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 51572 Query 38433 G 38433 | Sbjct 51571 G 51571 >seq181 Length=64741 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || || ||| | || ||||| | | Sbjct 7582 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 7523 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || || | || || ||||| || || | ||||| Sbjct 7522 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 7463 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || |||||||| |||| ||||| || | |||||||||| Sbjct 7462 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 7403 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || | || || Sbjct 7402 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGG 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167066769280