Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq79 190 3e-43 seq155 140 4e-28 >seq79 Length=115064 Score = 190 bits (210), Expect = 3e-43 Identities = 492/742 (66%), Gaps = 16/742 (2%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||||||||||| ||||| || || || | | || || || || | |||||| || Sbjct 13822 TTCTTATGTTTGCGTTTGAATTCGTTGACAAAATGGTT-AACAAGGCGGTTATCGAAGTC 13764 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || ||||| | ||||| || |||||||| | ||||| Sbjct 13763 CTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCAAT 13704 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGT 7581 | | | || ||||| || ||||||||||| || || ||||| || || || | Sbjct 13703 TGTGAGGAGAGACACATCGAAGGTACCACCACCTAGATCGAAAATCAGGACATTGCGCTC 13644 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | ||| |||| ||| ||||||||||| || ||||| || || || || || || || Sbjct 13643 ACCCTCGACTTT---CTTGTCGAGACCGTAGGCAATAGCGGCGGCAGTAGGCTCGTTGAT 13587 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||||||| ||| || || |||||| | || || || || || || | || || Sbjct 13586 GATACGAAGGACGTTGAGTCCGGCAATACGACCGGCGTCCTTGGTAGCCTGCCTCTGAGA 13527 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA-CTTTCTTACCGAGATACG 7760 ||||| |||||||| ||||| || ||||| |||| || || | | | || ||| | Sbjct 13526 GTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTCGGGACCGGTGTGCCCAAGA-AGC 13468 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || || || || ||| ||| | || | ||| || || || ||||||| | || | Sbjct 13467 CCTCGGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCTTCAGGTGTGAATT 13408 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 ||| ||| || || || || || | | ||| ||||| | | || | Sbjct 13407 CCTTCTCTTCGCCTTTGAATTCGACCTTGACCATAGGTTTGCCTTGTTTTTC---AATCA 13351 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | | | |||||||| | ||||||| | || ||||| | || | Sbjct 13350 CCTTGAAGGGAAAGTGCTTCATATCAGCCTGGACCTCCGGATCGTCGAACTTGCGGCCAA 13291 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | | ||| || || || || || ||||| | || ||||| || || ||||| || | Sbjct 13290 TCAAACGTTTGGCGTCGAAGACGGTGTTGTGAGGATTCATAGCGACCTGATTCTTGGCAG 13231 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || || || ||||| || | || | || ||||| | |||||||| ||||| | Sbjct 13230 CATCGCCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGGGTAGTTCGGT 13174 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || || || || | ||||||||| ||||| | | ||| | ||||| || | Sbjct 13173 TACCCTGCTCATTGGGAATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCAAGAGT 13114 Query 8121 ACGTTGTTCCTAAATCAATACC 8142 |||| || || || || ||||| Sbjct 13113 ACGTGGTACCCAAGTCGATACC 13092 >seq155 Length=75750 Score = 140 bits (154), Expect = 4e-28 Identities = 496/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 71096 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCTTC 71155 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 71156 TTACCGTCAAAGAAATCGGAAAGAAGCTTCTGGATCTTGGGAATACGGGTAGAACCACCA 71215 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 71216 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 71275 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || || || ||||| Sbjct 71276 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAACCGAGCACG 71331 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 ||| |||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 71332 GGTGATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 71391 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 71392 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 71449 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 71450 GCACGGGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 71509 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 71510 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 71568 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 71569 GACAGTGAAGACACCACCCTGGATGTTGAGAAGGGACACATCGAAAGTACCACCACCAAG 71628 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | || ||| | |||||||| || || Sbjct 71629 ATCGTAGATCAGGACGTTGCGCTCCTTCTCAGACTTGCCAGAGCCCAGACCGTAGGCAAT 71688 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || ||||| |||| || |||| || || |||| ||| | | | Sbjct 71689 GGCGGCAGCGGTGGGCTCGTTAATGATACGGAGGACA-TTGAGACCAGAAATGGCACCGG 71747 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 71748 CGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 71807 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | ||| ||||| ||||| | | || || || || ||||| Sbjct 71808 TCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCCTTCAT 71850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125519790280