Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq56 250 3e-61 seq1 105 8e-18 >seq56 Length=135535 Score = 250 bits (276), Expect = 3e-61 Identities = 1111/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| ||||||| || || | ||||| ||| Sbjct 119247 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAACGCGTT 119188 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||| ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 119187 TTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTC 119128 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | || |||| |||||||| | | | ||||| || Sbjct 119127 AACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGAC 119068 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 119067 AGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 119008 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | || | | ||| ||| || || || Sbjct 119007 GGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAAC 118948 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| ||| | || || ||||| ||||||||||| || ||| ||| || | || || Sbjct 118947 GGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGGTACGTT 118888 Query 111972 AACCAAGCTGGGCGTCGC-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGGCA 112024 |||| ||||| | ||| || || ||| | ||| || ||||| ||||| Sbjct 118887 GACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCA 118832 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || | | || || ||||| ||||| ||||| || | || || || || Sbjct 118831 CGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG-TG 118773 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||||| ||||| ||||| |||||||| ||||||||| | || || ||| Sbjct 118772 CTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGA 118713 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || ||||| | ||| | ||||| || || || || || | ||| | || | Sbjct 118712 ACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCG 118653 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||||||||| || |||||| ||||| ||| || | || ||| | ||| | Sbjct 118652 AGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 118594 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| |||| || |||||||| || | || | Sbjct 118593 CGTGC-CCAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCGAGACGGGCAACCCCTT 118535 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || ||||| ||| ||||| || || |||||| |||| || Sbjct 118534 TATGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAATCTGGGAACCATTCG 118475 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || || || || || || || ||| | || | | | |||||| ||||| || Sbjct 118474 CAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 118415 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | || || || | || || | | | | || | | | || | Sbjct 118414 CAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGACT 118356 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || || ||| ||||| |||| | || ||| Sbjct 118355 TCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATCGATG 118296 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 ||| ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 118295 TCAATCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 118236 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | | || ||| | || || || | Sbjct 118235 TTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCCCTG-CGCATGCCCTTCGAGTCTCCC 118177 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 118176 GAGGCCCGTGAGCTCAACAAGCAAATCTTCGAGACCATTTACCACGCTGCCCTGACAGCT 118117 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 118116 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCT 118057 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| || |||||||| || |||| |||| || |||| |||| | || Sbjct 118056 GAAGGTGTTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGGAG 118003 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || | | Sbjct 118002 TGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 117945 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||| ||| | ||||| ||||||| ||||| |||||||| || | Sbjct 117944 CTCCCATGCCCACCGCCTCTACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 117885 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 117884 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 117825 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||| ||||| | | |||||| | | ||| Sbjct 117824 GGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAACCGCATCA 117765 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | ||||||||||| || || || | || | || || ||| | | Sbjct 117764 TTGCCGAGAACGGTTCCATTCAGAACATCCCCAATGTCCCCGCCGACATCAAGGCTCTCT 117705 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || |||||||| || | |||| || | |||||||| || || ||| Sbjct 117704 ACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGACCGCGGTG 117645 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 117644 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 117587 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 117586 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 117529 >seq1 Length=456006 Score = 105 bits (116), Expect = 8e-18 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 102261 ||| ||||| ||||||||| ||| |||| |||| | |||| |||||||||||||| | Sbjct 315285 TGTGGAGGGCATCTTCTTCAGCGGTGCCTT-TGCGTCGATTTTCTGGCTCAAGAAGCGTG 315343 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 |||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 315344 GTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACA 315403 Query 102322 AAGAGTTTGC 102331 ||| ||||| Sbjct 315404 CAGATTTTGC 315413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735284740240