Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq56 291 1e-73 >seq56 Length=135535 Score = 291 bits (322), Expect = 1e-73 Identities = 1170/1812 (65%), Gaps = 59/1812 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 117530 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 117588 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| || || | ||| |||| |||| || ||| | Sbjct 117589 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 117646 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | || ||||| | || |||| | || ||||| || || |||| Sbjct 117647 CCGCGGTCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAG 117706 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | |||| || | ||| || ||||| ||||| | | || || Sbjct 117707 AGAGCCTTGATGTCGGCGGGGACATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 117766 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||||||||| || | |||||| |||| ||| Sbjct 117767 A---TGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGC 117823 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 117824 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 117883 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| ||||| | ||| ||||| || ||||| || Sbjct 117884 TATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGA 117943 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | |||||||| | ||||| ||| |||| Sbjct 117944 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCC 118001 Query 106068 AGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || | | || || || || |||| |||| || |||||||| || |||| || Sbjct 118002 ACTCCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAACACCTTCAGA 118059 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || Sbjct 118060 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGC 118119 Query 106186 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 106245 ||||| ||||| || ||||| || ||||| | || | ||| ||| || Sbjct 118120 TGTCAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGG 118179 Query 106246 TGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 || || || |||| || |||| | ||| | || || ||||| |||||||| Sbjct 118180 AGACTCGAAGGGCATGCGCAG-GGCA----AGAAAAGCGTCGGCAAGACCCTGAACACCA 118234 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | ||| || |||| |||||||| || || || || ||||| ||| ||| ||| Sbjct 118235 ACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTG 118294 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 || |||| ||| || || | || | | || | || || || || | Sbjct 118295 ACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGG 118354 Query 106421 TAATCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATT 106479 | || | || ||| | | | ||| | || ||||| | || ||||| || Sbjct 118355 AAGTCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTT 118413 Query 106480 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACT 106539 ||||||||| |||||| | |||||| | || || || |||| || || || Sbjct 118414 GCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCT 118473 Query 106540 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCAT 106599 ||| || |||| |||||| ||||| ||||| ||||||| ||||||||||| ||||| Sbjct 118474 GCGAATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCAT 118533 Query 106600 GTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTG 106658 |||| | |||||||| ||||| |||| ||| || | | ||| | | || | ||| Sbjct 118534 AAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTG-GGCAC 118592 Query 106659 GTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 106715 | ||| | || |||| || ||||| ||| ||||| |||||| || ||||||| Sbjct 118593 G---AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACT 118649 Query 106716 CCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 |||| ||| || || | || || || || || ||||| | || | ||| | Sbjct 118650 CCTC-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC 118708 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 || || || || |||||||||||||| ||||| |||||||| | ||||| || Sbjct 118709 CCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCG 118768 Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894 | | || ||||| | || ||||| ||| || ||||| || || | | || Sbjct 118769 CGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCT 118828 Query 106895 GCGTGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTG 106947 |||||||| ||||| || ||| | ||| || || ||| | | ||||| || Sbjct 118829 GCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCC----TG 118884 Query 106948 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 107007 | || || | || ||| ||| || ||||||||||| ||||| || || | ||| Sbjct 118885 GTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGT 118944 Query 107008 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 107067 ||| || || || ||| ||| | || | | |||| || || || || Sbjct 118945 ACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGAT 119004 Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 ||| |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 119005 ACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAAT 119064 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 ||| ||||| || ||| ||||| || |||| ||| | || |||||||| Sbjct 119065 GCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGC 119124 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTC 107245 |||||||| || |||| ||||| ||| | | |||| |||||| || ||| ||| Sbjct 119125 GTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTC 119182 Query 107246 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTAT 107305 ||||| || ||||||| || || || |||| || || ||||||| ||||| Sbjct 119183 TCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGC 119242 Query 107306 TGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTT 107364 || ||| || | || |||| | ||| ||||||| | || |||| || || || Sbjct 119243 TGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTT 119301 Query 107365 GAGACCAAAGTA 107376 || |||||||| Sbjct 119302 GAAGCCAAAGTA 119313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974037345080