Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq181 100 2e-16 seq92 98.7 6e-16 >seq181 Length=64741 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||||||||| || || ||||| | || | || || Sbjct 8130 AACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTC 8189 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || ||||| || |||||||| | || | ||||||||||| Sbjct 8190 GAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTG 8249 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| ||||| | || | ||| | ||| || |||| || ||||| || Sbjct 8250 AATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTT 8309 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||| ||||| Sbjct 8310 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| ||||| || | || | || |||||||| |||||| Sbjct 7386 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 7445 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | |||||||| || |||||| |||| Sbjct 7446 GCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTGGATTTG 7505 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | || || || | ||| || || ||||| || | Sbjct 7506 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAA 7561 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || |||||| Sbjct 7562 GGTCTTGACAAAAATTTGCATA 7583 >seq92 Length=104316 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 34758 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCG 34817 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 34818 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 34877 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 34878 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 34937 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || || || || |||||||| || Sbjct 34938 CCCGTGAGGGTTTTGACGAAAATCTGCATCTT 34969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629971915176