Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq56 104 3e-17 >seq56 Length=135535 Score = 104 bits (114), Expect = 3e-17 Identities = 218/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || ||||| || | | | ||||| || || || |||||||| | | Sbjct 118642 CTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGT 118701 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 118702 CCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAA 118761 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| ||||| ||| || | ||||||||||| | Sbjct 118762 GAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAA 118821 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| ||||| || || Sbjct 118822 CACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCC 118881 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | || |||||||| ||||| | || | | ||| || | || || || || Sbjct 118882 CTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA 118941 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 | |||| ||||| || | ||| ||| Sbjct 118942 TGTACCGTTGGTGCCGGCAATGTAA 118966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102356827880