Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq79 149 5e-30 seq181 100 2e-15 seq19 95.1 1e-13 >seq79 Length=115064 Score = 149 bits (164), Expect = 5e-30 Identities = 457/702 (65%), Gaps = 11/702 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 13911 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 13970 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 13971 CAGACTACGATTGAGATTGATTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 14030 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| |||| ||||| || || || || | || || || Sbjct 14031 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGAC 14090 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 14091 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 14150 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || ||||||| | || |||| | | | | || || || || ||| Sbjct 14151 GGTTCCACCCGAATTCCCCGTA-TCCAGAAA-CTCATCTCCGACTACTTTAACGGCAAAG 14208 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || |||||||||||||| || |||||||| | || || | Sbjct 14209 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 14268 Query 552253 CTATTCTTTCTGGACAAACT-----GATGAAAAACTACAAAATATTGTACTTGTAGATGT 552307 |||| || ||||| | ||| | | | | || |||| |||| | | || || Sbjct 14269 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACCAACGAAATCTTGT--TGCTTGACGT 14326 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 ||||| | ||||| ||| | || || | || || || ||||| || || || | Sbjct 14327 CGCTCCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCG 14386 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || || || || || || | ||| || || || | Sbjct 14387 CAACACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCC 14446 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 || || || || | ||||| || || || | ||| || || || || | | Sbjct 14447 TGGGGTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGAT 14506 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 14507 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 14566 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||| || ||| |||| |||||||| || ||||||| |||| Sbjct 14567 TACCTTTGATCTCGACGCCAATGGCATCATGAATGTCTCTGC 14608 Score = 140 bits (154), Expect = 3e-27 Identities = 327/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| ||||||| || |||||| ||||||| ||||||| ||| | |||| || Sbjct 13149 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCAATGAC 13208 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || |||||| ||| || Sbjct 13209 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAATCCTCACAACACC 13268 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || |||||||| ||||| | | || | ||| || || ||||| ||| Sbjct 13269 GTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGACGATCCGGAGGTCCAGGCTGAT 13328 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||| ||| | ||| | Sbjct 13329 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGCAAACC-TATGGTCAAGGTCGA 13387 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 13388 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 13445 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || || || |||| || | || || | || || | | Sbjct 13446 AAGATGCGCGAGATTGCCGAGGGC--TTCTTGGGCACACCGGTCCCGAACGCCGTCGTCA 13503 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || | || ||||| || || || || ||||||| Sbjct 13504 CTGTCCCCGCCTACTTCAACGACTCTCAGAGGCAGGCTACCAAGGACGCCGGTCGTATTG 13563 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| || || | Sbjct 13564 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCCTACGGTC 13623 Query 550530 TTGATAA 550536 | || || Sbjct 13624 TCGACAA 13630 >seq181 Length=64741 Score = 100 bits (110), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | || ||||| || || ||||| || ||| || || | Sbjct 7365 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 7423 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| |||||||| || || || Sbjct 7424 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTC 7483 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || || || ||||||| || | | ||| | | Sbjct 7484 CTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAG-AAGATTCGACTTCCAAGG 7542 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| | || || || |||||||||||| Sbjct 7543 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 7583 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||| || ||| || || ||||||||| || | | ||||| Sbjct 7593 AGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGG 7652 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || ||||| || || ||||| || |||| ||||| ||||| ||||| ||||| Sbjct 7653 CCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCC 7712 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||||||||| || ||||| || || ||||| | | || | | ||| | || Sbjct 7713 TTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAG-GATTCAACTTCCAATGT 7771 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||| || ||||| | ||| || ||||| || |||||| Sbjct 7772 AATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 7811 >seq19 Length=199040 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 || ||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 123155 ACCGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGCCAGAT 123213 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 123214 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 123273 Query 550528 ACTTGATAA 550536 |||||||| Sbjct 123274 CCTTGATAA 123282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029247504904330