Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq56 410 2e-109 seq1 136 7e-27 >seq56 Length=135535 Score = 410 bits (454), Expect = 2e-109 Identities = 1148/1744 (66%), Gaps = 66/1744 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 117488 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 117547 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 117548 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 117600 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | | Sbjct 117601 --ATCCTT------CATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGG 117652 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | || | || | ||| || | |||||| || |||||| ||| | Sbjct 117653 TCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCC 117712 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCT 212850 |||| ||| | |||| |||||||||||| | || || || | | | || | | Sbjct 117713 TTGATGTCGGCGGGGACATTGGGGATGTTCTGAATGGAACC---GT-TCTCGGCAATGAT 117768 Query 212851 GCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 || | |||| | || ||| || ||| | | || ||||| || || Sbjct 117769 GCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGG 117828 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| || Sbjct 117829 GTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGG 117888 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| | || ||| ||||| |||||||| || | || ||| |||||||||||||| | Sbjct 117889 CTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAG 117948 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| | ||| | | |||||||| ||| | | || | |||| ||||| Sbjct 117949 CAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCA 118008 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 |||| ||| ||| || ||||||||||| || || | | |||| Sbjct 118009 CAACTCAGA-AGG--------CTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGA 118059 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || || Sbjct 118060 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGC 118119 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 ||||||||||| ||| ||||| || || || | | ||||||||| |||||| || Sbjct 118120 TGTCAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGG 118179 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328 ||| ||||||||| || | | || | || || || ||||| || || | || Sbjct 118180 AGACTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACC 118239 Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGT 213387 |||||||| |||| || ||| ||| |||| |||||| | ||||||| ||| | Sbjct 118240 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGATTGACAT 118298 Query 213388 CGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGAT 213447 ||||||||||||||||||| ||| | |||||| || || | | || | || | Sbjct 118299 CGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGG---- 118354 Query 213448 TGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || |||||| || || | || || |||||||||| | ||||| || Sbjct 118355 --AAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGT 118412 Query 213502 TGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 ||||||| || ||||| | || | | |||||| |||||||| |||||||| || || Sbjct 118413 TGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGC 118472 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCA 213621 || ||||| ||||| |||| ||||| ||| |||| | ||||||||| |||| Sbjct 118473 TGCGAATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCA 118532 Query 213622 TGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCT 213681 | ||||| || ||||| ||||||| | ||||| | |||||| | | ||| Sbjct 118533 TAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGC-- 118590 Query 213682 TGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAAT 213740 || | | || | || ||| | | | ||| |||| |||||||| | | || Sbjct 118591 --ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAAC 118648 Query 213741 TCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTC 213799 || | ||| || | | | |||| || || || ||||||||||||| |||| || Sbjct 118649 TCCTCGCCATAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATC 118707 Query 213800 CCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 ||||| | | ||| | || |||||| || || |||| |||||| || ||| ||||| Sbjct 118708 CCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTC 118767 Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 | | | | || ||| || ||| || |||| ||| ||||||||||| | ||| Sbjct 118768 GCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTC 118827 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976 |||||||| ||||| | |||||||||||| || || | || | |||||||||||||| Sbjct 118828 TGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTC 118887 Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-C 214035 || |||||| ||||||||| ||| || | ||| | | |||||||| ||| | Sbjct 118888 AACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA-TGTAC 118946 Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCT 214091 ||||||| || || || || ||||||| || | || ||| |||| | || Sbjct 118947 CGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGC-GGTGGACGTTCAAGCCG 119002 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 || ||||| || ||||||||||||||| ||| | | | ||| || ||| ||| | Sbjct 119003 ATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCA 119062 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 |||||||| || | | || | | ||| ||| || ||||| || | ||| Sbjct 119063 ATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCA 119122 Query 214212 GAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTC 214271 | |||||| || || || ||| ||| | | | |||| | || | ||| ||||||| Sbjct 119123 GCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTC 119182 Query 214272 TCCA 214275 |||| Sbjct 119183 TCCA 119186 >seq1 Length=456006 Score = 136 bits (150), Expect = 7e-27 Identities = 349/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || |||| ||||| |||||||||||||| || |||| || ||||||||| Sbjct 315704 TGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCC 315645 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTG-TTCCAGCAG 47958 ||||| ||||||||||| || || || | || | || ||| || ||| || Sbjct 315644 ATGAAATCGAAGGGGTTGGCGGTTTTGTATA-CCTTTTCGTTACCAAGTGCAACCAATAG 315586 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-GG 48017 |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 315585 ACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGC 315526 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT-- 48075 |||| |||| ||||| || | |||||| | ||| || || || || | ||| Sbjct 315525 ACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATAT 315467 Query 48076 -CTGCTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCATGCAG 48133 ||| ||| | || || || | | ||| || ||| | | | || || Sbjct 315466 CCTGGATAATTTG---CT-TGCTGGCTCGGTGCTTAAGATGC---GAGTGCAACAGACAT 315414 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || ||||||| || || || ||| ||| || |||| |||||| ||| || Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || |||||||||||||| | ||| || | || |||||||||| Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGAT 48312 |||||||| || ||||| || | | || |||| | | ||||| |||| || Sbjct 315293 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGA-AT 315235 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||||||||| || ||| |||||| || Sbjct 315234 CCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 315196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522122305280