Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq56 358 1e-93 seq1 122 2e-22 >seq56 Length=135535 Score = 358 bits (396), Expect = 1e-93 Identities = 869/1289 (67%), Gaps = 63/1289 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 ||||||||||||||||| |||||||| ||||| ||||||||| ||| || ||||||| Sbjct 118121 GTCAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAG-CTCACGGGCCTCGGG 118179 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| ||||||| || ||||| || || | ||| Sbjct 118180 AGACTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACC 118239 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| ||||| Sbjct 118240 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGATTGAC 118296 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||||| | ||||||||||| | || |||| | ||||||| ||||||||| Sbjct 118297 ATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAA 118356 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || || || || ||||||| Sbjct 118357 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGCAGGGCAAGAGA 118404 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | |||| |||||||| || || || Sbjct 118405 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 118464 Query 221773 GTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||||| ||||| ||||| | || || || ||| | ||| || || Sbjct 118465 ATTAGAGCTGCGA---ATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATC 118521 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||||||||| ||| ||||| ||| | | | || || || |||||| Sbjct 118522 CTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAG 118581 Query 221890 TTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATA 221946 | ||||| | | | ||| | | | ||||| || ||||| | ||| | Sbjct 118582 CT-TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT---CATACTTCTCGTAGA 118637 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | |||||| || || || || ||||||| || ||| | ||||||||| Sbjct 118638 GAGCCT--CAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACAT 118695 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || |||| | | ||| | || ||| | || |||||| || || ||||||||||| || Sbjct 118696 GAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGC 118755 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | ||||| || | | || | || ||| ||||| ||| || | || ||| | ||| Sbjct 118756 AAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAA 118815 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||||| | ||| |||||||| ||||| || |||| ||| | || || |||||||| || Sbjct 118816 GTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATT 118875 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||| ||||| || || ||| ||| | |||||||| |||||| | || | | | Sbjct 118876 GCCGCCCTGGTCAACGTACCT-GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGC 118934 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG- 222302 |||||||| |||||||||||| |||||| | ||| || | || | | ||| Sbjct 118935 CGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGCGGTGGA 118991 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | || |||||||||||| || || ||||||||||| ||| ||||||||||||| Sbjct 118992 CGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGT 119051 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| || || || ||| ||||| | || | || ||||| || |||| |||| ||| Sbjct 119052 AGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATT 119111 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATC 222481 || || || ||||| || || || || |||||| || ||| ||| || ||||| Sbjct 119112 GGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACATG 119170 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCGC 222536 || | ||| ||||| | || | | |||||||| || ||| | ||| |||| Sbjct 119171 AGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGC 119230 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGT 222593 | | || ||||| ||| || | ||| || | | || | ||| | |||| || | Sbjct 119231 A--TAAT---CATGTGCTGAGGTCGCTCGAC-GATCTTGCCGTTGAGTTTGAGA--AGAT 119282 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACC 222652 | ||| | |||||||||||||| |||||||| |||| || ||||||||| ||| || Sbjct 119283 ATGATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACG 119341 Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTGCTT 222681 | ||||| ||| |||||| |||||| || Sbjct 119342 ATGGCGGAGTCAAGCTCCTCCTTGTGTTT 119370 >seq1 Length=456006 Score = 122 bits (134), Expect = 2e-22 Identities = 294/448 (66%), Gaps = 7/448 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || |||||||||||||||||||| ||||||||| | |||||| | | Sbjct 315263 AGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCGTCGA 315322 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||||||||| || || |||||||| || ||| || ||||| || ||| Sbjct 315323 TTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCT 315382 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | || |||||| | |||| ||||||||| || ||| | ||| || ||| | Sbjct 315383 CCCGTGATGAGGGTTTGCACACAGATTTTGCATGTCTG--TTGCACTCGCATCTTAAGCA 315440 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | | || |||| | | || | ||| |||| || ||||| | || ||| | Sbjct 315441 CCGAGCC--AGCAAGCAAATTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAA 315498 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 |||||| | ||||||||| || ||| |||| Sbjct 315499 GAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAG 315558 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTA 26234 ||||| ||||| | ||| ||||| | ||| | || || || || || | | || Sbjct 315559 CAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACGAAAAGGTATA 315617 Query 26235 CAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 || || | ||||| ||||| || ||||| ||||| || |||| || ||||| ||||| Sbjct 315618 CAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTT 315677 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| || ||| | || || || |||||| Sbjct 315678 CTTCGAGAAGCGAGTTGGAGAATATCAA 315705 Score = 102 bits (112), Expect = 2e-16 Identities = 177/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||| |||||||| || ||| |||||| ||||||||||| |||||| Sbjct 314805 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 314864 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| || ||| ||| || ||| | | |||||| | | ||| || Sbjct 314865 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTTATCTCA 314924 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||||||||||||| || ||||| || || || || || || || ||| | Sbjct 314925 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCGT 314984 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| |||||| || ||||| || |||||||| || Sbjct 314985 TTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGATG 315044 Query 25714 GAAAATGTGCACTCTGA 25730 || ||| | |||||||| Sbjct 315045 GAGAATATTCACTCTGA 315061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834153116480