Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq79 192 4e-43 seq181 127 1e-23 >seq79 Length=115064 Score = 192 bits (212), Expect = 4e-43 Identities = 463/697 (66%), Gaps = 19/697 (3%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| |||||||| ||||| | || |||||||| |||| ||||| Sbjct 13920 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGACTACG 13979 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| ||||||| || || || || || |||| | || | |||||| |||| Sbjct 13980 ATTGAGATTGATTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 14039 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| |||| ||||| || || || || | || || || | |||||| Sbjct 14040 TTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGACCGTGTTCTC 14099 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | || | || |||||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 14100 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 14159 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 ||||||| || ||||| | | || || ||||| || ||| || || Sbjct 14160 CGAATTCCCCGTATCC-AGAAACTCATCTCCGACTACTTTAACGGCAAAGAGCCCAAC-- 14216 Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| || || |||||||| |||||||| || || || |||||||| || ||||| | Sbjct 14217 AAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCCTG 14276 Query 475844 TCAGGTCAATC--------AGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 || ||| | | || | | ||| |||| | ||| ||||||| ||| Sbjct 14277 TCTGGTGACACTTCTTCCAAGTCTACCAACGAAATCTTGTTGC-----TTGACGTCGCTC 14331 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 | | || | ||| |||| || | || || || ||||| || || ||| | | || | Sbjct 14332 CTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGCAACA 14391 Query 475956 CTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTG 476015 | | || ||| ||| || || |||| || || || | |||||| || || | | Sbjct 14392 CAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGG 14451 Query 476016 TAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAA 476075 | |||||| ||||||| || || || | ||| || || || ||| | || | Sbjct 14452 TGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGATGGGCA 14511 Query 476076 CTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTT 476135 ||| | ||| || ||||| || |||||| | || |||||||| ||||||||||| | Sbjct 14512 AGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACCT 14571 Query 476136 TTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||| | || || ||||| || | ||||| |||| Sbjct 14572 TTGATCTCGACGCCAATGGCATCATGAATGTCTCTGC 14608 >seq181 Length=64741 Score = 127 bits (140), Expect = 1e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || || |||||||| || || || || ||||||| ||||| Sbjct 8119 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG 8178 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||||||||| || || ||||| || || ||||| |||||||| Sbjct 8179 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCC 8238 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| ||||||||||||| | | | || || Sbjct 8239 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGA-CCTCGAG 8297 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| ||||| Sbjct 8298 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 8336 Score = 109 bits (120), Expect = 4e-18 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || ||||| | || ||||| || | || || || ||| || | Sbjct 7361 ACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCG 7419 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || |||||||| || | Sbjct 7420 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGC 7479 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || |||||||| ||||||| || || ||||||| | | | || || Sbjct 7480 CCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCA 7539 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||||||| || || || | ||||| || |||||||| Sbjct 7540 A-GGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 7579 Score = 100 bits (110), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || ||| || || | | |||| Sbjct 7590 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 7649 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || |||||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 7650 CGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 7709 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||||||||| || ||| || || ||||| | | | | ||| | Sbjct 7710 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAAT 7769 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | |||||| ||||| || || Sbjct 7770 GTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 7807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268139865420716