Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq56 288 1e-72 >seq56 Length=135535 Score = 288 bits (318), Expect = 1e-72 Identities = 1163/1806 (64%), Gaps = 47/1806 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || |||| || | ||||||| ||| | |||| || | Sbjct 119313 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATCGT 119255 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| || || || ||||||| Sbjct 119254 CGAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGA 119195 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| Sbjct 119194 ACGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 119137 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| |||||||| || | ||| |||| || ||||| ||| || Sbjct 119136 ACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATG 119077 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||| ||| Sbjct 119076 AAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 119017 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| ||||| || || || |||| | | || | ||| ||| Sbjct 119016 ATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCC 118957 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| ||| | || || ||||| ||||||||||| || ||| ||| || Sbjct 118956 GGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCC 118897 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGG------GGTCCATC-GCGGTCTACTTGGA 75615 | || || | || ||||| | | | ||| ||| || ||||| | || Sbjct 118896 AGGTACGTTGACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGA 118841 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || || | | || || ||||| || ||| ||||| || | ||||| Sbjct 118840 GCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA 118781 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || | | || ||||| | |||||||| ||||| |||||||||||||| || Sbjct 118780 AAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGT 118721 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 || || || | ||| | || | ||||| || || || || || | || | Sbjct 118720 CGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTG 118661 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | ||| ||||||||||| || |||||| |||||||| ||||| | | | Sbjct 118660 CTATGGC-GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCA 118602 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| | | ||| | || | | ||| | | || ||| | || ||||| ||||| || Sbjct 118601 AGACTATTCGTGCC-CAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCGAGACGGGC 118543 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||| ||||||||||| || |||| |||||| ||||| |||||| ||||| Sbjct 118542 AACCCCTTTATGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAATCTGGGA 118483 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||||| ||||| |||||||| || | |||||| | |||||| Sbjct 118482 ACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTT 118423 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC-AATGAAGAGACTCGCAC 76092 ||||||||||| ||||| || | ||||| || | ||| | | | ||| || Sbjct 118422 GCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGACTACAAAGA-AGGCCG 118364 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || | || | | || | || || ||| | Sbjct 118363 CTACGACTTCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAGAT 118304 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| || ||| ||| ||| ||||| || || || || |||||||| |||| Sbjct 118303 CATCGATGTCAATCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACC 118244 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA----- 76267 || ||| | |||||||| ||||| || || | ||| | |||| || |||| Sbjct 118243 CATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCT----TGCC-CTGCGCATGCCC 118189 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 || || || || ||| ||| | || | ||||| || ||||| || ||||| Sbjct 118188 TTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATCTTCGAGACCATTTACCACGCT 118129 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 ||||| || | ||| |||| ||| ||||| |||| || || |||| Sbjct 118128 GCCCTGACAGCTTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGC 118069 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA-- 76445 |||||||| || |||| || ||||| || || |||| |||| || || || || | Sbjct 118068 TCTCCCGCCTCTGAAGGTGTTCTTCAATTCGACATGT-GGAATGTCAAGCC-TTCTGAGT 118011 Query 76446 ACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 76505 | || ||||| ||| ||||| | ||||||||| | ||| |||| ||| || || Sbjct 118010 TGTGGGAGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTT 117953 Query 76506 --TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 || | || || ||||| || ||||| ||| | ||||| ||||||| ||||| ||||| Sbjct 117952 GCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATTCTGGGTAACAATGAGTGCTT 117893 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 ||| |||||||| | ||||| |||| | | | | | || ||||| || | || Sbjct 117892 TGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGT 117833 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683 |||| ||| |||| || ||| | || ||||| ||||| | | |||||| | Sbjct 117832 CAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAA 117773 Query 76684 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743 | ||| | | | ||||||||||| || ||| | || |||| | || ||||| Sbjct 117772 CCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCAATGTCCCCGCCGACATCAA 117713 Query 76744 GAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGA 76803 | ||||||| || || ||||| || | |||| || | |||||||| || Sbjct 117712 GGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGA 117653 Query 76804 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACG 76861 || ||| ||| || || | |||| ||| | || | |||| | ||| || Sbjct 117652 CCGCGGTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACT 117595 Query 76862 ATGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAAT 76920 ||| |||| || | |||||||| | || || ||||| ||| ||||| || || || Sbjct 117594 ATGGGCAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCAT 117536 Query 76921 GTACTA 76926 |||||| Sbjct 117535 GTACTA 117530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562761820960