Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 123 7e-23 seq155 105 2e-17 >seq1 Length=456006 Score = 123 bits (136), Expect = 7e-23 Identities = 324/488 (66%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 || ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 315208 AAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGC 315267 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTT 133569 | || ||||| |||| || |||||||| || ||||| ||||| || ||| || ||||| Sbjct 315268 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTT-TGCGTCGATTTT 315326 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | || || || || |||||||||||||| || | Sbjct 315327 CTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCG 315386 Query 133630 GGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACT 133689 || |||| | ||||| || ||||| | | | ||||| | | ||| | | Sbjct 315387 TGATGAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGC 315446 Query 133690 CAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTAT 133749 || ||| | | || | || ||||| | || || |||| |||||| || ||| | Sbjct 315447 CAGCAAGCAAATTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTT 315506 Query 133750 CAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATAT 133809 | ||||||||||| | | | || ||||| | || ||| ||| ||||| Sbjct 315507 GACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATAT 315566 Query 133810 TGAATTTGTAGCTGACAG---ATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTC 133866 ||||||||| || || | ||||| | || || ||| || ||| | ||| | Sbjct 315567 TGAATTTGTCGCCGATCGTCTATTGG--TTGCACTT-GGTAACGAAAAGGTATACAAAAC 315623 Query 133867 CGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 |||||| || ||||| | ||||||| |||| | | | ||||| || |||||||| Sbjct 315624 CGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGA 315683 Query 133927 G--GCGAG 133932 | ||||| Sbjct 315684 GAAGCGAG 315691 >seq155 Length=75750 Score = 105 bits (116), Expect = 2e-17 Identities = 220/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 50217 CCATCTTCGCCATACAAGAACTGAATGATGTC-TCCTAATGAGTTTCGCACAGTCCCATC 50159 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 50158 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 50102 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 50101 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 50042 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 50041 AAACTCGGTAGGAGTAAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 49982 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | ||| ||| ||||| || |||| || | || | |||| |||| ||||| Sbjct 49981 GGAGTAGTCATCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAATGGAATACG 49922 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || ||||||| || Sbjct 49921 CTTGCCTTCCACAATCTGCTGACC 49898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800307523029