Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq56 140 4e-27 seq369 127 2e-23 seq170 113 6e-19 seq1 93.3 5e-13 seq155 86.0 8e-11 >seq56 Length=135535 Score = 140 bits (154), Expect = 4e-27 Identities = 327/492 (66%), Gaps = 15/492 (3%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| |||||||| |||||||| | || |||||| Sbjct 118879 GCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 118938 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||||| || | ||| | ||||| || || | ||| || || Sbjct 118939 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 118998 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 118999 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 119058 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || |||| |||||||||| || || || || || || || || | || Sbjct 119059 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 119118 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 119119 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 119178 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | ||||| | | | ||| || ||| ||| |||| || Sbjct 119179 GGTCTCCAAAACGCGTTCAA---TGTTGTC----TCCCCAA----ATA----CCGACCGC 119223 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 |||||||| | ||||| ||| || |||||||||| |||| | ||| || || Sbjct 119224 AACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATA 119283 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || | || ||| ||| ||||||||| | || || || | ||||| | ||| Sbjct 119284 TGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGAT 119343 Query 1630542 GGCGGCGTCGAG 1630553 ||||| ||| || Sbjct 119344 GGCGGAGTCAAG 119355 Score = 91.5 bits (100), Expect = 2e-12 Identities = 281/437 (64%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| |||||||| || | | || | || ||||| |||| ||||||| | || Sbjct 118450 GATCTCCGTGCACAGATTAGAGCTGCGAA-TGGTTCCCAGATTCTTCTGGTTGCTCTTCC 118508 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 |||| ||| ||||||| ||||| |||| ||| |||||| |||| | | ||| | Sbjct 118509 TGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTA 118568 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGAC-AGTCC-GCG--CGCGGCCCTNNNNNNNN 1628343 ||| |||||| || | ||||||| |||| ||| | ||||||| Sbjct 118569 TGGAGTACCAGAGCTTCTG----GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCA 118624 Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403 ||||| || |||| ||||| || |||||| || |||| Sbjct 118625 TACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCG 118684 Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACAC 1628463 ||||| | ||| | ||| || || | | |||| ||| || || || Sbjct 118685 TTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGG 118744 Query 1628464 GTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||||| || ||||||||||| || ||||| || |||||||||||||||||| Sbjct 118745 ATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGC 118804 Query 1628524 AGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 1628583 | || || |||| | | ||| |||||||| ||||| |||||| |||||| || || Sbjct 118805 AAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCA 118864 Query 1628584 TTGCGCTTGCCGCCGCC 1628600 ||||| |||||| Sbjct 118865 GGTCGCTTATTGCCGCC 118881 >seq369 Length=24112 Score = 127 bits (140), Expect = 2e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || || |||| |||||| | ||||||||||||| Sbjct 10437 CCAACTACCTCGACATCAAGCCCCTACTTGACGTTGGCTGCAAGACAGTGGCCAACATGA 10496 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 10497 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 10541 >seq170 Length=69302 Score = 113 bits (124), Expect = 6e-19 Identities = 256/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Plus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCG--CCGTGCATGCCACTGGCCGAGGCCGACATC 18177 |||| ||||||||||||| | |||| ||| | |||| || | ||| | |||||| Sbjct 48324 CGTCTCCTGCATCATCGACAAC-TGCCCTCCCGGTCTTGCC-CTCGTCGAAGATGACATC 48381 Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237 ||||| ||| | | || ||||| ||||||||| || | | || || |||||||| Sbjct 48382 CAGCCGCAGCTCAACCGCCGCCGGCCGGGCCAGTCGGCCATAACGACACCCCGCAACGAA 48441 Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297 || |||| |||||| || ||||| ||| |||| || || ||| ||||| | Sbjct 48442 AAAGACAAGGTCACCATCCACTCTGGCACCGAGTTCGGCAAGACCCTAGGCACGCCCATT 48501 Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG-- 18355 ||| || ||||| ||||| |||||| ||||| ||||| | | | Sbjct 48502 TTGCTCACGGTCCCCAACGAGGACCAACGGCCCAAGGACTACGGCGACAAGACGATCGAT 48561 Query 18356 ---TGCCGCGGCCCTCA--CACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGC 18410 | || | |||| || |||||||||| || || | | |||||||||| ||||| Sbjct 48562 CTCTACCCCCGCCC-CAGCCACGCCGACTGGACATATCTCGAAAAGTACGGCACAAAGGC 48620 Query 18411 GTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || ||||| ||| || ||||||||||| || ||||| ||||||||||| Sbjct 48621 CAGCTCCGGCGGCGGCAGGAGCAGCGCCCGCGAGACAATCGCCCGCGTGGCCGCCGGCGC 48680 Query 18471 GGTCGCCGAGAAATGGCTC 18489 |||||||| || |||||| Sbjct 48681 CGTCGCCGACAAGTGGCTC 48699 Score = 104 bits (114), Expect = 3e-16 Identities = 114/148 (77%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||||||| ||||| ||||| ||||||| || | || ||||||||| Sbjct 48919 GACAGCACCGGCGGCACCGTGACCTGCGTCATCCGCAACGCCCCCTCTGGTCTCGGCGAG 48978 Query 19107 CCGTGC-TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 || ||| || |||||| |||| ||| ||| ||||||||||| || ||||| ||| Sbjct 48979 CC-TGCGTTCGACAAGCTCGAAGCCCTCATCGGGCACGCCATGCTTTCCATCCCCGCCGT 49037 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTTT 19193 |||||| ||||| || ||| ||||||| Sbjct 49038 CAAGGGCTTCGAAATCGGC-TCGGGTTT 49064 >seq1 Length=456006 Score = 93.3 bits (102), Expect = 5e-13 Identities = 166/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| ||||| |||||||| | | || || |||||| Sbjct 315701 TATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCCATG 315642 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| || ||||| ||||||| || || | | | || || Sbjct 315641 AAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGTGCAACCAATAGACGA 315582 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||| || || || || ||| || |||||||||||| | ||| || | Sbjct 315581 TCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGCACAC 315522 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| ||| |||||||| ||| || | || || ||| ||| || | |||| Sbjct 315521 GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATAT-CCTG 315463 Query 868940 G 868940 | Sbjct 315462 G 315462 >seq155 Length=75750 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 48923 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 48981 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 48982 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 49041 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 49042 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 49092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107063946685689