Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq56 205 8e-48 seq181 98.7 9e-16 >seq56 Length=135535 Score = 205 bits (226), Expect = 8e-48 Identities = 1057/1671 (63%), Gaps = 50/1671 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGGT-ATTGTTGCAATATTTT 138415 |||||||| || |||||||| ||| | || | | || || |||| | || || | Sbjct 117686 ATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACATTGGGG--ATGTTCT 117743 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| ||||| | ||||||||||| || ||||| |||| | ||| || | Sbjct 117744 GAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCATAT 117803 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 117804 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 117863 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 117864 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 117923 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | |||||| |||||| Sbjct 117924 TAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 117983 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || ||| |||||||| || ||| || |||||||| ||| | | Sbjct 117984 GCTCCTTCAGATTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAATT 118043 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | | || | |||||| ||| | | | | | ||| || ||||| | Sbjct 118044 GAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGG 118103 Query 138776 CCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGA 138831 ||| ||| | ||| | || ||| | | |||||| || ||| || |||| Sbjct 118104 CCAGCTCAAGAGAAGCTGTC----AGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTG 118159 Query 138832 TTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCC 138891 |||||| |||||||||| |||| | |||||||| || || |||||||| Sbjct 118160 TTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCA 118219 Query 138892 AGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG----C 138947 || || || || || || |||| || ||||| |||| || ||| ||||| | Sbjct 118220 AGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGAGCCTC 118275 Query 138948 TTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007 || || || |||| || ||||||||||| ||||| | || || |||||||| | ||| Sbjct 118276 CTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGT 118335 Query 139008 CGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC-GACA 139065 | | | | | | | | || ||||| ||| | |||| |||||||| | | | || Sbjct 118336 CACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCA 118394 Query 139066 AATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTAT 139125 | || | ||||| | |||||| || || || || || ||| | | ||| Sbjct 118395 G-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTAC 118444 Query 139126 TCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTT 139185 || | || || | |||| |||| | || || || | ||| | || ||||| Sbjct 118445 TCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTGCTC 118504 Query 139186 TTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCT 139245 || | ||| || ||||| ||||| |||||| | || |||| || || || | ||| Sbjct 118505 TTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCG 118564 Query 139246 ATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCG 139301 | ||| | | | | | | || | || ||| || | | | || || Sbjct 118565 AGTATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCCTCACG 118620 Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||| ||||| |||||||| | || || || || ||| |||| || | | || Sbjct 118621 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCA 118680 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || ||||||||||| | ||| | |||||| | ||||||| ||||||| ||||| Sbjct 118681 CTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATC 118740 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 || ||||||| ||| | | | ||||| || || |||||| || ||| Sbjct 118741 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 118800 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 | || | ||| || ||||| ||||| |||||||| || || || |||||||| | ||| Sbjct 118801 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGC 118860 Query 139542 GCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || | | ||||| || || || |||| | ||| || ||||| ||||| | Sbjct 118861 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAG 118920 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCT 139656 ||| || | ||| | | ||| |||||||||| ||| ||| | | | ||| Sbjct 118921 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGC--CGGCAATGTAAGAGCCGGTAGCA 118978 Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATC 139715 |||| | || || || | |||||| || || | | ||||| || | | || || Sbjct 118979 CGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTC 119038 Query 139716 GCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 | | || ||||| ||||| ||||||||||||| ||| ||| || || || || Sbjct 119039 TTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGA 119097 Query 139776 CGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACAT 139835 || || || | | || || || || || ||||| ||||| ||||| | Sbjct 119098 AGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAG 119157 Query 139836 TTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACC 139895 | | ||||| | | ||| || || | ||| |||| | ||| ||||| Sbjct 119158 CTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACC 119217 Query 139896 GACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttttt 139955 ||| | || ||||| | ||| || || || ||| | | | ||| | || ||| Sbjct 119218 GACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAG 119277 Query 139956 CAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||| |||| || |||||| |||||||||| ||||||||| || Sbjct 119278 AAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 119328 >seq181 Length=64741 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| | ||||| ||| || | Sbjct 7810 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 7751 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || || || Sbjct 7750 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 7691 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || || || |||||| ||| |||| || || || Sbjct 7690 CAGCGACTCATCTTTGCTGGTAAGCAACTCGAGGATGGCCGAACTTTGTCCGACTACAAT 7631 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| |||| |||| || || Sbjct 7630 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 7584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892443048760