Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq369 122 1e-21 seq56 104 4e-16 seq1 102 1e-15 seq45 87.8 3e-11 >seq369 Length=24112 Score = 122 bits (134), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || || | || |||||||| ||||||||| | | Sbjct 10437 CCAACTACCTCGACATCAAGCCCCTACTTGACGTTGGCTGCAAGACAGTGGCCAACATGA 10496 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 10497 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 10541 >seq56 Length=135535 Score = 104 bits (114), Expect = 4e-16 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| |||||||| |||||||| | | |||||| Sbjct 118879 GCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 118938 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | || || | ||| || || Sbjct 118939 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 118998 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 118999 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 119058 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || |||| |||||||||| | || || || || || Sbjct 119059 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 119100 Score = 95.1 bits (104), Expect = 2e-13 Identities = 262/407 (64%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||| ||||| |||| ||||||||| || |||| ||| ||||||| |||||| ||| Sbjct 118479 TGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGG 118538 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCG 2071729 | ||||||||| |||| | | || |||| |||| | || |||||| Sbjct 118539 GGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGA----GCTTCTGGGCACGA 118594 Query 2071730 AGGTCCTCGCG----CGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCG 2071785 | || ||| ||||||| |||| || ||||| | || Sbjct 118595 ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCG 118654 Query 2071786 CCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCA 2071845 || | ||| || |||||| || |||| || || | ||| | ||| || ||| Sbjct 118655 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTC 118714 Query 2071846 GTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCC 2071905 | | ||||| ||| || || || ||||||| | ||||| ||||| || Sbjct 118715 TTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 118774 Query 2071906 CGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGC 2071965 ||||| || |||||||||||||||||| || || || |||| | | ||| |||||| Sbjct 118775 CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGC 118834 Query 2071966 CACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| |||||| |||||| || || ||||| |||||| Sbjct 118835 CAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCC 118881 >seq1 Length=456006 Score = 102 bits (112), Expect = 1e-15 Identities = 179/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 315716 ACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAG 315657 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 315656 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGT 315597 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | | || || |||||||| |||||||| || || ||| || | |||||||||| Sbjct 315596 GCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATG 315537 Query 794073 CCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || | ||| || ||| ||||| | |||| | | |||||||| ||| || | || || || Sbjct 315536 CCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTC 315478 Query 794132 GATGATGATCTGCCTGG 794148 | |||| || | ||||| Sbjct 315477 GGTGATAATAT-CCTGG 315462 >seq45 Length=139628 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || ||||| ||| | || ||||| || ||| Sbjct 118934 GTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCATGCTTTGCAAGTTCCCCAGGCAA 118875 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||||| ||| || | ||||||||| ||||| | | |||||| Sbjct 118874 GATCAAGCGAACAGAGGTCTGGATTTCGCGAGAGGAAATCGTG 118832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916148854527563