Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq92 127 1e-24 seq181 114 8e-21 seq47 111 1e-19 >seq92 Length=104316 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| ||| |||| |||| Sbjct 34754 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 34813 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 34814 TTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 34873 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| || || Sbjct 34874 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 34933 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || || |||||||| Sbjct 34934 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq181 Length=64741 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||||||||| || || || || |||| | || Sbjct 8128 AGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCC 8187 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || |||||||| | || | ||||||||||| Sbjct 8188 TCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 8247 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 8248 TGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTC 8307 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || ||||| |||||| Sbjct 8308 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 8340 Score = 105 bits (116), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||| || || ||||| || ||| | || |||| Sbjct 7827 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 7886 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| |||| ||| ||||| || | || | |||||||| || Sbjct 7887 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 7946 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| |||| ||| || Sbjct 7947 TGAATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 8002 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | ||||| |||| || ||||| Sbjct 8003 GGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 8037 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||| |||||||| ||||| ||||| || |||| | || ||||| ||||||||| Sbjct 7386 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 7445 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 7446 GCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTGGATTTG 7505 Query 34901 ACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAG 34956 || || | ||||| ||| | ||||| || | ||| || |||||||| || | Sbjct 7506 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAA 7561 Query 34957 GGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| || ||||| Sbjct 7562 GGTCTTGACAAAAATTTGCAT 7582 >seq47 Length=141222 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || | || || || ||||| || ||||||| Sbjct 51571 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 51630 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | ||||| ||||| Sbjct 51631 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 51690 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| || ||||| || | Sbjct 51691 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 51750 Query 34968 A 34968 | Sbjct 51751 A 51751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689160077623