Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq56 266 3e-66 seq92 118 1e-21 seq47 111 2e-19 seq181 102 8e-17 >seq56 Length=135535 Score = 266 bits (294), Expect = 3e-66 Identities = 998/1548 (64%), Gaps = 59/1548 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 117830 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 117889 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| ||| |||| ||| | || ||||||||| || | | Sbjct 117890 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 117949 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| ||||||||| | |||| | | || || | ||||||| |||| ||||| Sbjct 117950 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 118009 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 | | || || | || |||||||||||| | || |||| || ||||| | Sbjct 118010 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAG 118069 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC----GCAGCTCGCCTCGAG 148555 |||| | | | ||| || || ||| | ||||| || | |||| | || Sbjct 118070 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC----AG 118125 Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT-- 148613 || ||| |||||| |||||| |||||| |||||||| | | | | |||| Sbjct 118126 GGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCT-CACGGGC--CTCGGGAGA 118182 Query 148614 -TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672 ||| | ||||| ||||| | ||| ||||||||||| ||||| || || || || || Sbjct 118183 CTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGAT 118242 Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGAT 148732 ||| || ||| |||||| | ||| || ||| | || || || ||| ||||| Sbjct 118243 GGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGAT 118302 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 |||||||| || || || || ||||| | || | | | ||| | || ||||| Sbjct 118303 GATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTA 118362 Query 148793 C---------TTGTCATCTACGATG-CATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 |||| || |||| | || || || ||| | |||||| | ||||| | Sbjct 118363 GCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAAA 118418 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATT 148899 | || |||||| ||||| | |||||| | |||||| | ||||||||| ||||| Sbjct 118419 CAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAA 118478 Query 148900 TGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGT 148959 || | |||| ||||| || |||||||| |||||||| || |||||||||||||| Sbjct 118479 TGGTT---CCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAA 118535 Query 148960 ACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCA 149019 | || ||| || || ||| | || | |||| | || | ||| || || | Sbjct 118536 AGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGCACGAA 118595 Query 149020 ----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073 ||||| || || ||||| |||| || | ||| | |||| || ||| Sbjct 118596 TAGTCTTGCGGCCA----CGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACT 118649 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 ||||||| |||||||| | || || ||||||| || || |||||||| | ||| | | Sbjct 118650 CCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCC 118709 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| | | ||||||||||| || ||||| || | ||| || || | |||||||| Sbjct 118710 CGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 118769 Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253 | || | ||||| ||| ||| |||| | || | | || | ||| | Sbjct 118770 GAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTG 118829 Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGA 149310 ||||||| ||||| | ||| | || | || || ||| |||||||||||||| | Sbjct 118830 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAA 118889 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 ||| | | ||||||| || || |||| ||| || ||||| ||| || |||| Sbjct 118890 CGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGT 118949 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 | || | |||| | |||| || || | ||| ||||| | |||||| || | Sbjct 118950 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 119009 Query 149431 C-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 | ||| | ||| ||||| || ||| ||| || |||||| || || |||||| Sbjct 119010 CAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTG 119068 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCC 149546 ||| ||||||| | || || || || ||| || || | | || || || Sbjct 119069 TCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCG 119125 Query 149547 GCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTC 149605 ||| | || || |||||| || || | || |||| ||| | | ||| | ||| Sbjct 119126 TTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG-ACATGAGGTGGTAGGTCTC 119184 Query 149606 GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTG 149665 | ||||| || |||| || || || || | || |||||||| | ||| ||||| Sbjct 119185 CAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 119244 Query 149666 CGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTA 149725 |||||||| | | ||| | |||||| | || | || || |||||| | Sbjct 119245 AGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAA 119304 Query 149726 GCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||||||| | |||| ||||| | | ||| | | ||||||| ||| Sbjct 119305 GCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTC 119352 >seq92 Length=104316 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| | | | || ||||| Sbjct 34761 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCTTCGAG 34819 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 34820 CTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 34879 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | |||||| || | ||||| || || || Sbjct 34880 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 34939 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 34940 CGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq47 Length=141222 Score = 111 bits (122), Expect = 2e-19 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| |||||| ||||||||||| ||| | || Sbjct 51573 TTCTGAATGTTGTAGTCGGACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAGAT 51631 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| |||||||| ||| || ||||| | || Sbjct 51632 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTC 51691 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| ||||| |||||||| || ||||| Sbjct 51692 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 51751 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 51752 A--CTGAATGGTGTATT 51766 >seq181 Length=64741 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| ||||||||||||||| || Sbjct 8143 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 8202 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || || || |||||||| ||||| |||| Sbjct 8203 GCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTCGACTTG 8262 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || || | | ||| || |||| || | ||| |||||||| || || Sbjct 8263 ACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 8322 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| || ||||||| Sbjct 8323 TTGACGAAGATTTGCATGG 8341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | |||||||| Sbjct 7605 AAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCA-TCCTCGAG 7663 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||| ||||||||||| || || ||||||||||| || || Sbjct 7664 TTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT 7723 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | || || || || | || | || ||||| Sbjct 7724 CTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCC 7783 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 7784 AGTCAAAGTCTTGACGAAGATCTGCAT 7810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415258789080