Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq56 228 8e-55 seq92 98.7 9e-16 seq1 82.4 7e-11 >seq56 Length=135535 Score = 228 bits (252), Expect = 8e-55 Identities = 995/1547 (64%), Gaps = 63/1547 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 117830 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 117889 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | || | ||||| |||||| || | | Sbjct 117890 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 117949 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | | ||| | ||||||| | | | ||| |||||| Sbjct 117950 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 118009 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | | || ||| | || |||||||||||| | || || || ||| | ||||||| | Sbjct 118010 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAG 118069 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCAC----AGCTTGCCTCGA 147187 || ||| |||| |||| || | || || | ||| ||| |||| | | Sbjct 118070 CCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGAAGCTGTC----A 118124 Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCT 147245 | || | | ||| ||||| ||| |||||| ||||| || |||| || || Sbjct 118125 GGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGG--GCCTCGGGAGA 118182 Query 147246 CTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGAT 147305 |||| | ||||| ||||| | ||| || ||||| | |||||| | ||| || ||||| Sbjct 118183 CTCGAAGGGCATGCGCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGAT 118242 Query 147306 AGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCA 147363 |||||||| ||||||| | || || || ||||| || || ||| ||| Sbjct 118243 GGGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGATTGACATCG 118300 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 || ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || Sbjct 118301 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCG 118360 Query 147424 TAAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479 || || |||| | ||| | ||| || || ||| | ||| |||| ||||| Sbjct 118361 TAGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCA 118416 Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCA 147536 || || ||| || | | | | ||||| | ||| || | |||||| || ||||| Sbjct 118417 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC- 118475 Query 147537 TTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCAT 147596 ||| ||||| ||| | ||| ||||| |||| ||||| || || ||| | ||||| Sbjct 118476 --GAATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCAT 118533 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCG 147656 | || ||| |||||| || | || | || | || | ||| || || Sbjct 118534 AAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGCACG 118593 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 | || || |||||||| || ||| |||||| | ||||||||| || Sbjct 118594 AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTC 118653 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776 ||| |||||||| || ||||| || |||| | |||||||| || | ||| ||| Sbjct 118654 GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTT 118713 Query 147777 CGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG--- 147833 | | ||||| ||| || ||||| || | |||||| || | || ||||| Sbjct 118714 CTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGC 118773 Query 147834 -CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGG 147892 || ||| | |||| | || | || || ||||| ||| | | | | | ||| | Sbjct 118774 ACGGTTTTC-TTCCTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACGTCTG 118829 Query 147893 CGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGA 147949 ||||||| || || | ||||| ||| | ||||| ||| || ||||||||||| | Sbjct 118830 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAA 118889 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGT 148009 | | | | ||||||| || ||||| | |||||| | |||| | | || |||| Sbjct 118890 CGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGT 118949 Query 148010 TGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGC 148069 ||||| || | |||| || || | ||| ||||| | ||| || || | Sbjct 118950 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 119009 Query 148070 C-GCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATG 148125 | ||| | ||| || |||||| | | | | |||| |||||| ||||| ||| Sbjct 119010 CAGCCAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATG 119065 Query 148126 CTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA-AT--CCGCGTTCCC 148182 ||||||| || | | | | | ||||| ||| ||| || || || | || || Sbjct 119066 CTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCA 119122 Query 148183 GCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACG 148240 || ||| || || || ||||| || || | || | || ||| | | | || | Sbjct 119123 GCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAGG 119180 Query 148241 TCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGT 148300 |||| | | || ||| |||| ||| || ||| || | ||| |||||||| | ||||| Sbjct 119181 TCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGT 119240 Query 148301 GCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTT 148359 |||| ||||| ||| | | |||| ||||| |||||||||||| | || || || Sbjct 119241 GCTGAGGTCGCTCGACGATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTC 119299 Query 148360 TTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| | |||||||| | || | || ||| ||||| ||||||| Sbjct 119300 TTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGC 119346 >seq92 Length=104316 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 34745 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 34804 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 34805 GCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 34864 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 34865 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 34924 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || ||||| | |||||||||||| Sbjct 34925 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq1 Length=456006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 47056 GCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG-CA 47114 |||| || | |||||||| || | ||| ||||| || | || |||||||||| || Sbjct 315488 GCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCA 315547 Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAGCTCGGACA 47173 || | ||| |||||||||| ||||| || |||||||| |||| |||| || || | Sbjct 315548 CACT-AATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGG-TA 315604 Query 47174 ACCGAAA--TATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAG 47231 || ||| ||| || | | || || || || || ||| | |||||||| | | Sbjct 315605 ACGAAAAGGTATACAAAACCGC-CAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 315663 Query 47232 GGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||||| || || || |||||||| ||||| ||||| ||| Sbjct 315664 GGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATAT 315702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605736844120