Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 7e-11 >seq1 Length=456006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 110729 TTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTTTAAGAAAGAATCGTTCC 110788 || || ||| |||| | ||||| || || || | || |||| | |||| || || Sbjct 314965 TTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATAAAGTATTTCTCG 314906 Query 110789 TTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACATGTCGATCTCTTCGACC 110848 | |||| |||| |||||||| || | ||||||||||||| |||||||||||| || Sbjct 314905 TCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCC 314846 Query 110849 TTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAA 110888 ||||| | | | | |||||||| ||| |||||||| Sbjct 314845 GTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAA 314806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089298105440