Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq56 109 8e-18 >seq56 Length=135535 Score = 109 bits (120), Expect = 8e-18 Identities = 208/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | | |||||| || | || || ||||| || || Sbjct 119181 ACCTACCACCTCATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGC 119123 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 || || || | ||| || || || || || | |||||||||| ||| || Sbjct 119122 TGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCAT 119063 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| ||||| |||||| || || | ||||||||| ||| || || || Sbjct 119062 TGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTAT 119003 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| || || ||| | || || | ||| | ||| | || ||||||||||| Sbjct 119002 CGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTAC 118943 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | | |||||||||||||| || ||| |||| || | ||||| ||||| Sbjct 118942 ATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGGTACGTTGACCA 118883 Query 260182 GTGC 260185 | || Sbjct 118882 GGGC 118879 Score = 93.3 bits (102), Expect = 6e-13 Identities = 330/509 (65%), Gaps = 24/509 (5%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| || | |||||||||||||| | || | ||||||||| ||| | || ||||| | Sbjct 117974 AGCACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAA 117915 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTG 263031 | ||||| |||| ||| || ||| ||| |||| |||||| ||| |||||| || Sbjct 117914 TTCTGGGTAACAATGAGTGCTTTGAGC-CATACACGTCCAACATTTACCAGCGCCGTGTC 117856 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 | | || || || || ||||||| | || ||||| | || | || Sbjct 117855 TTGGCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGT 117796 Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTT 263151 || ||| | | | | |||| ||||||| | | || || | ||| | | Sbjct 117795 CTTTGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATC 117736 Query 263152 GACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCC 263211 | | | | || |||| |||||||||||| |||||| || |||||| | | Sbjct 117735 CCCAATG------TCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCT 117682 Query 263212 AACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCG 263271 | || || | ||||| |||||||||| ||| | |||||||| ||||||| Sbjct 117681 CAGCGTCATGTTATCCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCG 117622 Query 263272 CTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTAT 263328 |||||| | || | || || || || | ||| |||| || |||||| | | Sbjct 117621 CTCAACGTTCACATGAAGGATCCTACTATGGGCAAGA---TCACCTCTATGCAC---TTT 117568 Query 263329 GCGTGGC-----GTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383 || |||| || | || |||||||| ||||||||||| ||||||| | | | |||| Sbjct 117567 GC-TGGCTGGAAGTTG-GGTCTCAAGACGGGCATGTACTACTTGCGCACGCAGGCTGCTG 117510 Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412 | |||| || |||||||| |||||| Sbjct 117509 CTGCACCCATCCAGTTCACCGTAGATCAG 117481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177722753664554