Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq181 125 7e-24 seq92 113 5e-20 seq47 107 2e-18 >seq181 Length=64741 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | |||||||| || || || ||||| ||||||||||| || | Sbjct 8113 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 8172 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | ||||||||| || || || Sbjct 8173 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGA 8232 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || ||||| || || Sbjct 8233 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACC 8292 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || ||||| | || || ||||| |||||||| Sbjct 8293 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||||||||| || || ||||||||| Sbjct 7812 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAG 7871 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || || |||||||| ||||||||||| || || Sbjct 7872 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 7931 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 7932 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 7991 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || || || ||||| || ||||| ||||| || || Sbjct 7992 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 8026 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||| || | ||| |||||| || ||||||||||||| | ||| | Sbjct 7365 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 7424 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | || ||||| || || || ||||| || Sbjct 7425 CCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCC 7484 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| ||| | || || || ||||| || || | ||| Sbjct 7485 TTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTA 7544 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || ||||||||||| Sbjct 7545 ATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 >seq92 Length=104316 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || ||||||||||||| | |||| | Sbjct 34749 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 34808 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || ||||| || | || ||||| || || || ||||| || Sbjct 34809 CCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 34868 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 34869 TTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTG 34928 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 34929 ATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 34970 >seq47 Length=141222 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | ||| || ||| || ||||| ||||| || || | Sbjct 51571 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 51630 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || ||||| || || ||||| ||||| ||||| || Sbjct 51631 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 51690 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | ||| || |||| Sbjct 51691 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 51750 Query 134704 AA 134705 || Sbjct 51751 AA 51752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392606870840