Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq56 208 1e-48 >seq56 Length=135535 Score = 208 bits (230), Expect = 1e-48 Identities = 1088/1721 (63%), Gaps = 54/1721 (3%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 117839 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 117898 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || || || || ||||| || || | || || Sbjct 117899 TCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 117958 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || |||| | ||| ||||| | ||||| Sbjct 117959 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 118018 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| |||| |||| || | | || || || || | Sbjct 118019 GGCTTGACATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAG 118078 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | ||| ||| ||| Sbjct 118079 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTCAGGGCAGCGTGGTAA 118138 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| || | ||| ||||| || | || || || ||||| || ||| Sbjct 118139 ATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGC--ATGC 118196 Query 69079 AAAAG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | Sbjct 118197 GCAGGGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCA 118256 Query 69137 TATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 | || | || | ||| || ||| || |||| ||| | ||| || || || || || Sbjct 118257 TGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGG 118315 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA 69255 || ||||| || |||| | ||| || | || || | || || | || || ||| | Sbjct 118316 TTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTG 118375 Query 69256 ------ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 || || | ||| || | ||| || | || ||||| || ||||||| || Sbjct 118376 TAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGG 118435 Query 69310 TTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366 ||| || | || ||||| || || |||||| | || || |||||||| Sbjct 118436 ---GCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTC 118492 Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 | ||| || ||||| |||| ||||| |||||||| || ||||| || | || || || Sbjct 118493 TTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCG 118552 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---A 69483 |||| || |||| || || | ||| | | ||| || |||||| | Sbjct 118553 GTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCA 118609 Query 69484 CGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 || ||| ||||| || | ||| | |||| || || || || || | |||| Sbjct 118610 CGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAG 118667 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTC 69598 ||| ||||| || || || |||||||| | | ||| ||| | | ||| || | Sbjct 118668 CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCTTTTCGACGC 118724 Query 69599 GTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTT 69658 | ||||| || ||||| || ||||| ||||| | ||||| || | | | ||||||| Sbjct 118725 GCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTT 118784 Query 69659 CATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 69718 | || || || ||| | ||| ||||| || | | || | ||||| || || | Sbjct 118785 CCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGA 118844 Query 69719 GATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGT 69778 | || || || | | || ||||| ||||| || ||||| || | ||| |||||||||| Sbjct 118845 GGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGT 118904 Query 69779 TATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATAT 69838 | || |||| | ||||| ||||| || || || ||| |||| || || || | ||| | Sbjct 118905 TGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGT 118964 Query 69839 AACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGA 69898 || || | || || || | | || || || || ||||| || |||| Sbjct 118965 AAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGA 119024 Query 69899 TTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAA 69958 | | ||||| || | ||||| || ||||| || ||||| || || |||||| | Sbjct 119025 TCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGA 119084 Query 69959 GAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATG 70018 || |||||| ||||| ||| || || || || || || | |||||| || | Sbjct 119085 CTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGG 119144 Query 70019 CGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT--- 70075 |||| ||||| || || | || | ||| || || | | | ||| || | Sbjct 119145 CGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGT 119204 Query 70076 ---CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCG 70132 |||| ||| || | ||| || ||||| | ||| ||||||||||| || || Sbjct 119205 CTCCCCA------AATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGA 119258 Query 70133 TTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGT 70192 | || || | ||| | || |||||| | |||||||| || || ||||| || | | Sbjct 119259 TCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGAT 119318 Query 70193 ATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTA 70252 | |||||||| ||||| | || | || | || | ||||| | ||| | || Sbjct 119319 AGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTTTCATGACGC 119378 Query 70253 TATC-CATAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACA 70308 || || | || ||||| || || || || | |||| || || || ||| Sbjct 119379 ACTCGTATGTCTGT-TTCGAGATCATTGGCGAGGCACGCT---CATTCTTGGGGTTGACA 119434 Query 70309 TAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTT 70368 |||| | ||| ||| | ||| | | | ||||| || | |||||| || || Sbjct 119435 TAGTGGTATAGATCGCTGACAACAGCCGACCACTGCTTTTTAGTCTGCTTGTGCAAGTTG 119494 Query 70369 GATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 || | ||| || | ||| || ||||||||||| || ||||| Sbjct 119495 GAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 119535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900926307880