Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 >seq1 Length=456006 Score = 102 bits (112), Expect = 6e-17 Identities = 204/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||| || || || | || || || ||||| || ||||| | ||| || Sbjct 314805 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 314864 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATC 43845 | || ||||| |||| |||||| | | | | || | || ||| | ||||| || Sbjct 314865 TCCAAGGACTT-GCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTTATCTC 314923 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||||||| || |||||||| ||||| || ||||||||||| ||| || || Sbjct 314924 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCG 314983 Query 43906 GTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| || ||||| | || || || || || || ||||| || || || | Sbjct 314984 TTTCAGCGGC-GAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 315042 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || |||||||| || |||| ||| ||| ||||| |||| ||||||||||| Sbjct 315043 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATCGATAGCTACATCAAAGA 315097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 330/505 (65%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 ||||||||||||||| || ||||| | || ||||| || | | || | Sbjct 315211 AAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGCTTG 315270 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || || || | |||||| ||||| ||||| || | |||||| | || || ||| Sbjct 315271 GTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCGTCGATTTTCTGG 315330 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| || ||| ||||||| || | || || || || || | || |||||| Sbjct 315331 CTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGAT 315390 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTT--ACTTGGATATCTAGGAGACGATAAGC 44312 || || || || |||||||| || |||| ||| | || | || | ||| || Sbjct 315391 GAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCGCATCTTAAGCAC-CGA---GC 315446 Query 44313 CTTCATGTAAGACAATTA--CAG-ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAAT 44369 | || | || |||| ||| ||||| | || || || || || ||||| | Sbjct 315447 CAGCAAGCAA----ATTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGT 315502 Query 44370 TTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAA 44428 || |||| || | || ||| | | |||| ||||| | | ||||| ||| Sbjct 315503 TTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAACGCCACACTAATGAAGCAA 315561 Query 44429 TATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT 44488 |||||||||| | || |||||| || | | | ||| ||| ||| || |||| Sbjct 315562 TATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGG--TATACA 315619 Query 44489 GTACAA--AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTT 44546 || ||||| || ||||| ||||| || ||||| |||| ||||| |||||||| | Sbjct 315620 AAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCT 315679 Query 44547 TTGAAAAACGCGTTGGAGAATATCA 44571 | || || || |||||||||||||| Sbjct 315680 TCGAGAAGCGAGTTGGAGAATATCA 315704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451558056585