Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq56 293 3e-74 >seq56 Length=135535 Score = 293 bits (324), Expect = 3e-74 Identities = 1170/1811 (65%), Gaps = 57/1811 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 117530 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 117588 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| | ||| | ||| |||| |||| || ||| Sbjct 117589 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 117646 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | || ||||| | || |||| | ||| |||||||| || ||| Sbjct 117647 CCGCGGTCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAG 117706 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | |||| || | ||| ||||| |||||||| | | | Sbjct 117707 AGAGCCTTGATGTCGGCGGGGACATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 117766 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||| ||||| || | ||| || |||| ||| Sbjct 117767 ATGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAG 117826 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 117827 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 117886 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| ||||| | ||| ||||| || ||||| || || Sbjct 117887 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCG 117946 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | ||||||||| | ||||| ||| ||||| | Sbjct 117947 AGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 118004 Query 110844 CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | | | || || || || |||| ||||||| || ||||| || |||| || || Sbjct 118005 CCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAACACCTTCAGAGGC 118062 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || Sbjct 118063 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGT 118122 Query 110962 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 111021 ||||| ||||| || ||||| || ||||| | || | ||| ||| || || Sbjct 118123 CAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGA 118182 Query 111022 ATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || || |||| || |||| | ||| | || || ||||| |||||||| | | Sbjct 118183 CTCGAAGGGCATGCGCAG-GGCA----AGAAAAGCGTCGGCAAGACCCTGAACACCAACA 118237 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 || || |||| |||||||| || || || || ||||| ||| ||| ||| Sbjct 118238 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGATTGACA 118297 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 || |||| ||| || || | || | | || | || || || || | | Sbjct 118298 TCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAG 118357 Query 111197 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 || | || ||| | | | ||| | || ||||| | || ||||| ||||| Sbjct 118358 TCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 118416 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 |||||| |||||| | |||||| | || || || || | || || || Sbjct 118417 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCG 118476 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 ||| || |||| |||||| ||||| |||||| ||||||| ||||||||||| ||||| | Sbjct 118477 AATGGTTCCCAGATTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAA 118536 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTA 111434 ||| | |||||||| ||||| || | ||| || | | ||| | | || | ||| | Sbjct 118537 GGGGTTGCCCGTCTCGGTCTGGGACTCGAGTATGGAGTACCAGAGCTTCTG-GGCACG-- 118593 Query 111435 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 ||| | || |||| || ||||| ||| ||||| |||||| || |||||||||| Sbjct 118594 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCT 118652 Query 111492 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 | ||| || || | || || || || || ||||| | || | ||| | || Sbjct 118653 C-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCC 118709 Query 111551 CCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | ||| || || |||||||||||||| ||||| |||||||| | ||||| || | Sbjct 118710 CGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 118769 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | || ||||| | || ||||| ||| || ||||| || || | | || | Sbjct 118770 GAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTG 118829 Query 111669 CGTGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGA 111721 ||||||| ||||| || ||| | ||| || || ||| | | ||||| || Sbjct 118830 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTATTGCCGCCC----TGG 118885 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || || | || ||| ||| || ||||||||||| ||||| || || | ||| | Sbjct 118886 TCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTA 118945 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || || || || ||| ||| | || | | |||| || || || ||| Sbjct 118946 CCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATA 119005 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 119006 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATG 119065 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||| ||||| || ||| ||||| || |||| ||| | || |||||||| Sbjct 119066 CTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCG 119125 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 112019 |||||||| || |||| ||||| ||| | | |||| |||||| || ||| |||| Sbjct 119126 TTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTCT 119183 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 |||| || ||||||| || || || |||| || || ||||| | ||||| || Sbjct 119184 CCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCT 119243 Query 112080 GTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 112138 | || || | || |||| | ||| ||||||| | || |||| || || ||| Sbjct 119244 GAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTG 119302 Query 112139 AGACCAAAGTA 112149 | |||||||| Sbjct 119303 AAGCCAAAGTA 119313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024801183200