Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15]
917 sequences; 32,918,153 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq56 297 2e-75
seq1 100 4e-16
seq195 93.3 5e-14
>seq56
Length=135535
Score = 297 bits (328), Expect = 2e-75
Identities = 1135/1770 (64%), Gaps = 29/1770 (2%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| |||||| || |||| | || | ||||||||| ||||||||||| |
Sbjct 117492 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 117551
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||||| || | ||||| |||| | |||| | || ||| | ||||
Sbjct 117552 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 117611
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| ||| | ||||| || ||||| ||| || || || || ||||| | || |
Sbjct 117612 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAA 117671
Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044
||| | || ||||| |||||| ||||||| ||| || || | |||| ||
Sbjct 117672 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACAT 117731
Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101
||| || || ||||| ||| || | | |||| | | |||||| | | |
Sbjct 117732 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 117788
Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161
|||| ||||| || | |||||||| | ||| ||||| || || ||||
Sbjct 117789 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 117848
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || | | || | | | || || |||| |||||||||||||||||||||||||||||
Sbjct 117849 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 117908
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||| ||||| | || ||||| ||||||||||| || | || | ||| || | ||
Sbjct 117909 CCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 117968
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 118339
| | ||| | || | ||||| ||| |||||| || | | || | || |
Sbjct 117969 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 118026
Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399
| |||||| || || || || | ||||| || || || || |||| || || ||
Sbjct 118027 ATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 118086
Query 118400 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455
||||| | | | |||| || | |||| | ||||| ||||| || || |
Sbjct 118087 GGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC----AGGGCAGCGTGGTAAATGG 118142
Query 118456 TTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA 118515
| || || || | || | | ||||||| || || || | | ||
Sbjct 118143 TCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGG 118202
Query 118516 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 118575
|| ||| | || || ||||| || ||||| | || || || ||||||| ||| ||
Sbjct 118203 CAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGC 118262
Query 118576 ACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 118635
|| ||||| ||| | ||| ||| ||| |||||| | | | || || || |
Sbjct 118263 TGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGA 118322
Query 118636 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-G 118694
||| || | || | || || ||||| | | | || | | || ||| | | | |
Sbjct 118323 CGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCG 118381
Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754
|| | ||| ||||| | || |||| || || |||| |||||| || |
Sbjct 118382 ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 118441
Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814
||||| || || |||||||||| || || || |||||| |||| ||||| || ||
Sbjct 118442 TACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTG 118501
Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874
||| |||| || ||||||||||| ||||| | || | |||||||| || ||||||
Sbjct 118502 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGAC 118561
Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTC 118933
| ||| || | | ||||| | || | || | | ||| | | | || |||||
Sbjct 118562 TCGAGTATGGAGTACCAGAGCTTCTGG-GCACGAATAGTCTTGCGGCCACGGCCCTCACG 118620
Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993
||| ||||| |||||| || |||||||| || || | || | || || ||
Sbjct 118621 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCA 118680
Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053
|| | || || | ||| | ||| | || || || || ||||||||||| || ||
Sbjct 118681 CTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATC 118740
Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 119113
||||||||| || || |||||| || ||| || |||||| | || || ||
Sbjct 118741 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 118800
Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173
||||| || | |||||| | | || |||||||| || || ||||| | || | ||
Sbjct 118801 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGC 118860
Query 119174 CCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230
|| || | || |||||| || ||||| |||||| ||| || || |||||
Sbjct 118861 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAG 118920
Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCT 119290
||| |||||||| || | |||| || || || || ||| ||| | || |
Sbjct 118921 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACG 118980
Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350
|| ||||| || || || ||||| || ||| ||| ||||| || || | |
Sbjct 118981 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 119040
Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410
|||| || ||||||| || || || ||| |||| | ||| ||||| ||| ||
Sbjct 119041 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 119100
Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC 119470
|| ||| ||| ||||||||||||||||| || |||| |||||| ||| | | |
Sbjct 119101 CAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGC 119158
Query 119471 TTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528
||| |||||| || |||||||||||| ||| ||||| || || |||||||
Sbjct 119159 TTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCG 119218
Query 119529 ATCGAGACCCGCATAAACATGTATTGGGGT 119558
| || || ||||||| ||||| || |||
Sbjct 119219 ACCGCAACGCGCATAATCATGTGCTGAGGT 119248
>seq1
Length=456006
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| | |||||| ||||||||||| ||||| || |||||| || ||
Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||| ||||| |||||||| | ||||||||||| ||| | || |||||||||
Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294
Query 130136 CCCTCCACACACGCGAACGC 130155
||||||||| ||||| ||
Sbjct 315293 CCCTCCACAGCAGCGAAAGC 315274
>seq195
Length=57600
Score = 93.3 bits (102), Expect = 5e-14
Identities = 224/333 (67%), Gaps = 12/333 (4%)
Strand=Plus/Minus
Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291
||| | ||| || | ||| |||||||||| ||| | || ||| ||| ||||
Sbjct 54640 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54585
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| ||||| ||||| |||| ||||||||| ||||| ||||| || || | || ||
Sbjct 54584 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 54526
Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410
| | | |||| | || |||||| ||| || |||||| || | |||||| || || ||
Sbjct 54525 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 54466
Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469
||||||||||| ||||| || | ||||| |||| | |||| | | |||||||
Sbjct 54465 GTCTTCCCCGTTCCTGGAGGTCCGACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 54407
Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529
| | || || ||| || | || || || || || | ||||| | || ||||| ||
Sbjct 54406 GTCGGAGAAGTTTTCGGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 54347
Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562
| || || | ||||| ||||| || ||
Sbjct 54346 CTCATCACAACCGTGCACGTCGCTGAATCGAGT 54314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428111186520
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