Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq56 297 2e-75 seq1 100 4e-16 seq195 93.3 5e-14 >seq56 Length=135535 Score = 297 bits (328), Expect = 2e-75 Identities = 1135/1770 (64%), Gaps = 29/1770 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 117492 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 117551 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 117552 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 117611 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | ||||| || ||||| ||| || || || || ||||| | || | Sbjct 117612 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAA 117671 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| |||||| ||||||| ||| || || | |||| || Sbjct 117672 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGACAT 117731 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 117732 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 117788 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 117789 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 117848 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 117849 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 117908 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| ||||| | || ||||| ||||||||||| || | || | ||| || | || Sbjct 117909 CCAGAATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 117968 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 118339 | | ||| | || | ||||| ||| |||||| || | | || | || | Sbjct 117969 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 118026 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | |||||| || || || || | ||||| || || || || |||| || || || Sbjct 118027 ATTCCACATGTCGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 118086 Query 118400 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455 ||||| | | | |||| || | |||| | ||||| ||||| || || | Sbjct 118087 GGGGCCTTGCTCTTTGGCCAGCTCAAGAGAAGCTGTC----AGGGCAGCGTGGTAAATGG 118142 Query 118456 TTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA 118515 | || || || | || | | ||||||| || || || | | || Sbjct 118143 TCTCGAAGATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGGG 118202 Query 118516 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 118575 || ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 118203 CAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGC 118262 Query 118576 ACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 118635 || ||||| ||| | ||| ||| ||| |||||| | | | || || || | Sbjct 118263 TGTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGA 118322 Query 118636 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-G 118694 ||| || | || | || || ||||| | | | || | | || ||| | | | | Sbjct 118323 CGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCG 118381 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 || | ||| ||||| | || |||| || || |||| |||||| || | Sbjct 118382 ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 118441 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| || || |||||||||| || || || |||||| |||| ||||| || || Sbjct 118442 TACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTG 118501 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| |||| || ||||||||||| ||||| | || | |||||||| || |||||| Sbjct 118502 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGAC 118561 Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTC 118933 | ||| || | | ||||| | || | || | | ||| | | | || ||||| Sbjct 118562 TCGAGTATGGAGTACCAGAGCTTCTGG-GCACGAATAGTCTTGCGGCCACGGCCCTCACG 118620 Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993 ||| ||||| |||||| || |||||||| || || | || | || || || Sbjct 118621 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCA 118680 Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 || | || || | ||| | ||| | || || || || ||||||||||| || || Sbjct 118681 CTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATC 118740 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 119113 ||||||||| || || |||||| || ||| || |||||| | || || || Sbjct 118741 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 118800 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 118801 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGC 118860 Query 119174 CCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 || || | || |||||| || ||||| |||||| ||| || || ||||| Sbjct 118861 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAG 118920 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCT 119290 ||| |||||||| || | |||| || || || || ||| ||| | || | Sbjct 118921 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACG 118980 Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350 || ||||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 118981 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 119040 Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410 |||| || ||||||| || || || ||| |||| | ||| ||||| ||| || Sbjct 119041 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 119100 Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC 119470 || ||| ||| ||||||||||||||||| || |||| |||||| ||| | | | Sbjct 119101 CAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGC 119158 Query 119471 TTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 ||| |||||| || |||||||||||| ||| ||||| || || ||||||| Sbjct 119159 TTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCG 119218 Query 119529 ATCGAGACCCGCATAAACATGTATTGGGGT 119558 | || || ||||||| ||||| || ||| Sbjct 119219 ACCGCAACGCGCATAATCATGTGCTGAGGT 119248 >seq1 Length=456006 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294 Query 130136 CCCTCCACACACGCGAACGC 130155 ||||||||| ||||| || Sbjct 315293 CCCTCCACAGCAGCGAAAGC 315274 >seq195 Length=57600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 224/333 (67%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 54640 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54585 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 54584 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 54526 Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | | | |||| | || |||||| ||| || |||||| || | |||||| || || || Sbjct 54525 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 54466 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469 ||||||||||| ||||| || | ||||| |||| | |||| | | ||||||| Sbjct 54465 GTCTTCCCCGTTCCTGGAGGTCCGACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 54407 Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | | || || ||| || | || || || || || | ||||| | || ||||| || Sbjct 54406 GTCGGAGAAGTTTTCGGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 54347 Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562 | || || | ||||| ||||| || || Sbjct 54346 CTCATCACAACCGTGCACGTCGCTGAATCGAGT 54314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428111186520